getgenbank function's error of downloading

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Berk Saglam
Berk Saglam 2020-12-9
编辑： Ive J 2020-12-9
I can't use getgenbank function because of the error below. I have succesfully used this code before with same internet connection. Can someone solve this problem before? Thanks.
>> a= getgenbank('AB247454.1');
Error using urlreadwrite (line 98)
Error downloading URL. Your network connection may be down or your proxy settings improperly
configured.
Error in urlread (line 36)
[s,status] = urlreadwrite(mfilename,catchErrors,url,varargin{:});
Error in getncbidata>accession2gi (line 349)
searchXML = urlread(searchurl);
Error in getncbidata (line 181)
[giID,db] = accession2gi(accessnum,db,'quick');
Error in getgenbank (line 70)
[varargout{1:nargout}] =
getncbidata(accessnum,'fileformat','GenBank','database','nucleotide',varargin{:});
  1 个评论
Ive J
Ive J 2020-12-9
编辑：Ive J 2020-12-9
I would guess your network connection has a problem. I could get it smoothly. Also, to my experience NCBI GenBank is not so user friendly; so, just try again!
mySeq = getgenbank('AB247454.1')
struct with fields:
LocusName: 'AB247454'
LocusSequenceLength: '15231'
LocusNumberofStrands: ''
LocusTopology: 'linear'
LocusMoleculeType: 'mRNA'
LocusGenBankDivision: 'VRT'
LocusModificationDate: '13-JUL-2007'
Definition: 'Danio rerio ryr1b mRNA for ryanodine receptor 1b, complete cds.'
Accession: 'AB247454'
Version: 'AB247454.1'
GI: ''
Project: []
DBLink: []
Keywords: []
Segment: []
Source: 'Danio rerio (zebrafish)'
SourceOrganism: [4×65 char]
Reference: {[1×1 struct] [1×1 struct]}
Comment: []
Features: [100×74 char]
CDS: [1×1 struct]
Sequence: 'atggcagaaggagaggggggagatgaagagatccagttcctgcggacggaagatcaggttgtgctccagtgcacagcgaccgttctgaaggagcagatcaaactgtgcctgtcctgcgaaggctttgggaaccggctgtgctttttagagacaacttcaaatgcccagaatgttccccctgatctagccatctgttcgtttgtgctggagcagtcgctgtcggttcgagctctgcaggagatgctggcgaacaccgtggacatgacggagtcatctcagggaggaggacaccgaacgctgctatatggtcatgccatcctcctgagacactaccattctagcatgtatcttagctgtctgacgacatcacgttcactaacagacaagctggcctttgatgtgggcctgcagttggatgcaacaggggaagcatgttggtggaccatccatcctgcatccaaacagagatccgagggtgagaaggtcagagtaggagacgacctgatccttgtcagcgtgtcatcagagagatacctacatctgtcatacgccagtggagacctgatggttgatgcctccttcatgcagaccttatggaacatgaatccagtctgttcaggttgcgagttggcagaggggtacttaactggaggtcatgtcttaagactgtttcatggtcacatggatgagtgtctggccatctcaacacctgatcagggagaggagcagcgcaagattgcgcagtatgaaggaggggcagtatgtagtcaggcccgctcattgtggagacttgagcctctgagaatcggatggagcggtagccacatgaagtggggtcaggcgttccgcgttcgccacatcacaacaggtcgatatctgtgtctggatgatgagaagggcctgatggttctggatccagagaaagcaaacaccaaacaatctgccttctctttccgtgcctcaaaagagaaagtggaaggggagaagaaaaagcgggatgttgagggaatgggtattcctgagatcaagtatggcgagtccatgtgctttatgcagcatatttctacaggcctgtggctcacatatgctgctttagatgctaaagcggctcgcctgggaaccatgaagagaagggtcatgttacatcaagagggccatatggatgacgcactgacctgctctcgctctcagacagaagagtcccaggcggctcgtatgatctacagcaccacaggcctttttacacagttcatcaaaggtctggactctctcagtgggaagaacaaatcacccggtccagtgtctctgcctctggatggagtgattctgtcccttcaggatctgatccactacttcagacctccagaggaagagctggaacacgaggagaaacagaccaaactgcgttcgctacgcaaccgacagaacctcttccaagaggaggggatgatcaccatcgtgctggaatgtatcgaccggctgaacgtctacaacactgctgcacacttctctgagtttgctggagaggaagcagctgaatcctggaaagagatcgtcaatttgctctatgagctgcttgcatctctgatcagaggaaaccgttctaactgtgctctgttttgtgataatctggactggctggtcagtaaactggatcgtctggaagcttcatcaggcattctcgaggtgctgtactgtgttttgattgaaagtcctgaagtcttaaacatcattcaggagaatcacatcaagtccatcatttctctcttagacaaacatggacgaaaccataaggttttggacgtgttgcggtctctgtgtgtgtgtaacggtgttgctgtgaggtccaatcaaaacctcatcaccgaaaatttacttccgggtcgtgacctgctactgcagactaacatcgttaactatgcttcaagtgtgaggcccaatatcttcttggggacttgtgaaggttccacccagtataagaagtggtattttgaggtgatggtggactatgtggagtcatttgtgacggctcaggccactcatctgcgagtgggctgggccatgactgaaggcttcagcccatacccaggaggaggagagggctgggggggcaatggtgtgggtgatgacctctactcttatggctttgatggacttcacttgtggtcaggtcatgtgtcacgtcaggtggcttcgcccaatcagcatgccttggcagctgatgatgtcgtgagttgttgtttggatctgagcgtgcccagtatctccttccgcatcaatggccatccggtccagggaatgtttgagaacttcaacttagatggcttgttcttccctgccattagcttttctgctggagtgaaagcccgctttcttttaggtggccgtcatggggattttaagtttttacctcctcctggttatgcaccatgttatgaggctcttcttcccaaagacaggatgcgcattgagcccattaaagagtataaacatgactttgaaggagtcagaaacctgttagggcccacacagtccctcacacacacctcattcactccctgtcctgttgacacggctcagattgttctacctcctcatttggagcggatcagagagaagcttgccgaaaacatacatgagctctgggctgtgacccgtattgagcagggctggacctatggagtgttcagggatgataataagaagttgcacccgtgtctggtggactttcaaagtcttccagaacccgagagaaattataacctccagatgtctggagagaccttgaaaaccctgttagctctgggctgccatgtaggcatgggagatgagaaagcagaggagaatctgagaaagatcaaattgcccaaaacttatgtgatgagcagcggatacaaacccgctcctttggacctcaatcatgtcaaactgacgcctaatcagaaccagttggttgaaaagctggcagaaaacgggcacaatgtttgggcaagagacagagtcagacaaggatggacctacagcattgtgcaggatattgtgaataagcgtaaccctcgtctggtgccttacaatttgctagacgagagaaccaagaagaccaaccgagacagtgtgaacaatgctgtacgcactttgattggttacggatataacatcgagccaccagatcaggagagcagcggtcatggtgttgaggatgtgcatggagataaagtgagaatcttcagggcagagaagcagtatggtgttacctcaggaaaatggtattttgagttcgaggctgtaactacaggagaaatgagggtcggctgggctcgaccgaacgtccgctctgatgttgagcttggttctgatgagttggcctatgtcttcaatggaaacagggctcagcgatggcacattggtaatgatccgtttggtcgtcagtggcagtctggtgatgttgttggttgcatgatagacctcattgaaatgaacatcatgttcacgctcaacggagagatgctgatcagcgattctggttcggaaatggccttcaaagacattgagattggagacggctttattccagtttgcactctgggtctttctcaggttgggcgtattaaccttggtcagaatgttagcagtttgcgctacttcgccatctgtggcctccaagagggctttgagccattcgccatcaacatgaagagagacatcacaatgtggttcagcaagagcctgccccagtttgttcccgttcccactgatcacaaccacattgaggtctctcgtgtggatggaactgtagacagtgctccctgtataaaaattacccacaagacgttcggatcccaaaacgccaacactgacatgctgttcttcaggctaagcatgccagtggagtttcaccttacctttaaggtgcctgctggcactacccccctcacacgagccctcaccatcccagaagaagaagtgctggaggtggacccagactcagactatgaggtgcttaagaagtccgccagtcgcaaagagcaggaggagaaagaaaaggagccgtctgttcctaaagatatcccaggcgttaaagaaaacgacaaagacactgcatctgagaaaggaaagaagaaaggcttcttgtttaaagctaaaaaggcagccatgatcactcctcctccacctccacctcttatgcctcgtttgattgaagacgtggtgccagatgatcgcgatgacgtggacatcatccttaataccaccacatactattactcggttcgtatcttcgctggacaagagcctagcgaggtgtgggttggttgggtcacaccagacttccacatgtatgacctcaacttcgatctgtctaaagttcgtacggttacagtgacagttggagacgacaaaggcaacatacatgacagtataaagagaagtaactgctacatggtgtggggaggagagttcagcagcagccagcagaagttcagccaggaggatctggtgattggttgcttggttgatctggcaacaggccttctgaatttcacagccaatggaaaggagatcaacactttctaccaggtggagcccaacactaagctcttcccagctgtgtttgttcttccaagcagccaaaacatgctccagctggaacttggaaaactcaagaatatcatgcctctttcggcagccatgtttcgtagtgagcgcaagaaccctgttcctcagtgtccacctcgactggatgttcagatgttgacccctgtcatctggagccggatgcccaaccacttcctcaatccagtggtgggacgggtgagcgagaggcatggctggatggtggaatgtacagagcctctcactatgatggcgctgcatatacctgaagaaaacaggtgcattgacatcctggaactatctgagcaacatgacctgctgcagttccactatcacactctgatgctttattgcgccgtgtgtgcactgggcaacaaccgtgtagcccatgccctctgcagccatgtggatgaatcccagctcttctatgcgattgagaacacgtacctgcctggccctctccgcagcggctactacgaccttcttatcagtattcatctggagtcagccaaacgcaaccgcttaggaaccaatcgcgagtttattgttcccatgacatcagagacgcttagtatcacactgttcccagatgcagaggcagcccatgacctgccgggagtgggtctcaccacctgcctcagacctaagctacacttctcccccatcaactttgtaggcactgatccagatctgtacaccctgagccccatcatacctctgcagaatctaaagacccaggctctaagcatgcttactgaagccgtgttcgatggcagccaggccatgcgtgatcctgtagggggcagcgttgagttccacttcgttccaatcctcaaactcatcagcactctcctcatcatgggcatcttcaacaatgaagacgtcaagcacatcctcaagatgattgatcccagtgtgtttggaaagaaagaagaggcagaggaaccagccgaggaagcagctcccaaagaggaaggagaggaagtgaaagagaaagaagaaacggctgaaggagaggaggaggctgtggatgaaggagttggggaggaggaagaggaggagctgaaagagctgaagaaggaggagggagaggaaggagaagaggtcgagaaggccgtagaggaggaggatggagagaaggtggatggagaaaaagcagaggaggaaaaggaggcagaagaagtaggagaggaggccaaagaggaagaagaggaggcgccagaggagggtctacttcaaatgaagatgccagagtctgtgaaactgcagatgtgtactcttctacagtatttctgcgactgtgagctcagacacagagttgaagccataatggcatactctgataattttgtagggcagatccagtcaaaccagcgtgagcgttataatgagctaatgagagcgtttactatgtctgctgcagaaacagctcgcaggacccgagagtttcgctctcctccacaagaacaaattttcctgttgactaacttcaagcacaacccagaagaagaagattgccctgtcccagatgaagtgcgagaaacccacaacaatttccacaatgacctcctgaatcactgtggcgtccacattgaggaagaagtggaggaggaagaggtggacacatctctgagaggcagactgctcactttggtggacaaggtcaaaagccttaagcagaaaaaggaagaagaggaaccagagccagaggaagaacccaaaccaagtactttacaggagttgatatcccacacaatgatccactgggctcaagaggcctttattcagaatccagagctggtgcgactcatgttcagtcttctccaccggcagtatgatgctcttggagagctgattcgtgcactgcccaaggcttacgccatcagtgccgtgtctgtacaagacacgatggaaatgctggagtgcctggggcagattcgatctctgcttattgtccagatgggtccggaagaggaaagactcatgatccagagcattgggaacatcatgaacaacaaagtgttctaccagcaccctaacctgatgcgagcgctgggcatgcatgagacagtcatggaggtgatggtcaacgtgctgggaggtggaggagattcaaaggaaattcgatttccacaaatggtgaccaactgctgtcgcttcctgtgctacttctgcagaatcagccgccagaaccagcgctccatgtttgaccacctctcttacttgctgcagaacagtggcattggactgggaatgcgtggatctacccctctggatgttgctgctgcatcctgcattgacaacaatgagctggcactggccctgcaagagcaagaccttgaaatggtggtgacttatctggctgggtgtggccttcgaatgtgccccatgcttctgtctaaaggctatcctgacatagggtggaatccaggtggaggagagagatatctggacttcctgcgcttcgctgtgtttgtaaatggtgagagcgtagaggagaatgctaatgtggttgttcgtctgttgattcgtcgtcctgagtgctttggccctgccctgagaggagagggtggtgctggtctgttagcagccattgaggaggccattaagatctctgaagaccctgccagagatgggccaactcctaaaaaagacagacgcttcatgtttggaggggaggatcagcacgaagagaatagattacatcttggaaatgctatcatgtcattttattctgcccttattgacttgctgggtcgctgtgctcctgagatgcatttgatccaagcaggtaaaggcgaagctttgagaatccgagccatcttgcgatctcttgtgcccattgaagacttggttggagtcatcagtcttcctgttcaaatccccacctttggcaaagatggtcagatcgttgagccaaaaatgtcagcgagtttcgtgccagaccacaaagcctccatggttcttttcctggacagagtgtacggcatcgataaccaggacttcctgttacatgtgctagaagtgggtttcttgcccgatatgagagcttcagcctctctggatacggtggcgttcagcaccacagaaatggctctggctctgaaccgttacttgtgttctgccgttctgcctctgctcactaaatgtgccccactgttcgctggcactgatcatcgcgccatcatgatcgactctatgctgcacaccatctacaggctgtcccgaggccgtgcccttaccaaagcccagagggacgtcattgaggactgccttatgtctcttgtcaagtatctgcggccatctatgttgcagcatctgttgagaaggctggtgtttgatgtgccaatcttaaatgagtatgccaagatgcccctcaagctgttgaccaatcactacgagcgctgctggaagtattattgcctgccgaacggatgggcaaacttcggagtcacatcagaagaggagctgcatctctcacgcaaactcttctggggcatatttgagtctctcgcacacaagaaattcgatgcagagctgtttaagatcgccatgccctgcatctgtgccattgcgggtgccattcctccagactatgtggatgcaagttattcatcaatgactgagaagaaagcgtctgttgatgctgagggcaacttcgaccccaaaccagtggaaactaccaacaccatcattcccgagagacttgatgccttcattaacaaatatgctgagcacactcatgataaatgggcttttgagaagatccaaaacaactggacatatggagaggttctagatgagaacgccaaaactcaccccatgctgcggccttataaaactttctctgaaaaggataaggagatctatcgctggcccattaaggagtccatcaaggccatgctggcatgggaatggactttagagaaagccagagatggggagactgaggtaaaaactgaggtgaaggccaccaggaagatctcccagactgcacaggccacctatgatcccagtcaaggatactctcctcagccagtggaccttataggcatggccttgtccagagagctacagtctatggcagaacagcttgcagagaactaccacaacacctggggccgcaagaagaaaatggagctacaagccaagggtggtggcactcatcctttgttggtaccctatgatacactgacggccaaagagaaggctagagacagagaaaaagcccaagacctgctcaaattcctccagctgaatggatacgctgtaaccaggggtttgaaagacatggagcaggagatttcctccattgagaagcgctttgcttacgggttcctgcagaagctgttgaagtggatggagatcgctcaggagtttattgctcatcttgaggctgtcgtgagcagtggaagagttgaaaaatccccacacgaacaggagattaaattctttgcaaagattctgctcccgctcataaaccagtactttaagaaccactgcctgtatttcctgtccactcctgctaaagtgctgggcagtggtggtcacgcatccaacaaggagaaggagatgattgctagtatcttctgtaagttggccggtctggtgagacacagggtttccctctttggcactgatgcctcagctgtggtcaactgtcttcatattctttcccgttcactggatgccaggactgtaatgaaatctgggcctgagattgtgaaggctggtctgcgctcattctttgaaagtgctgctgatgatattgagaagatggttgagaacctcaaattagggaaagtgtccaccaaaaatcaggtgaaaggtgtatctcagaacattagctacaccaccactgctcttctgccagtcctgacctctctgttcgaccacatcgcccagcaccagtttggagatgatgtcatgttggatgacttgcagatctcctgttaccgcatcatgtgcagtatctactcactgggcaccgtaaagactcctcatgctgagaaccaaagaccagctctaggagagtgtctggctcatcttgctgccgccatgcctgttgccttcctggagccaaacctcaacgagttcaactcatactctgtgtacactaccaaaaccccacgagagagaacaattctgggtctccccagtcaagtgcaggagctgtgtctggacatccctgagctggacgtgttgatgaaagaaatcgggcatctggcagagtctggggcccgttacacagagatgcctcacgtgattgagatcaccctacctatgctctgcaactatctgcctcgctggtgggaaaggggaccagagaacttcccagagcaggaaggctgtctgtgcaccgacgtcacctccgaacaactcaatcaac…'
SearchURL: 'https://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=AB247454.1'
RetrieveURL: 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=152002443&rettype=gb&retmode=text'

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