Hi Adam,
There is no configuration option present. However, you can use 'System Initialize' block to write custom code for the same. Below is an example of the custom code.
EALLOW;
GpioCtrlRegs.GPAPUD.all = ~0xFFC003E3U; //Pull up for GPIOs 0-1, 5-9, 22-31
EDIS;
Hope this helps.