Are there a toolbox that help me to represent files .fastq from NGS how array (log2Ratio vs base_position)?

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munoz minjares
munoz minjares 2015-1-27
评论： munoz minjares 2015-4-21
I watched the webinar Next Generation sequencing with Bioinformatics Toolbox:...ChIP-Seq Data, but I need to visualize the information in arrays, example HR-CGH, is it possible? I'm not expert in genetic but I want to apply some statistical tools to these data.
Thanks

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Luuk van Oosten
Luuk van Oosten 2015-4-10
Yes. You can import .fastq files that contain NGS data. click here for an intro. To import .fastq files use somthing like:
FASTQStruct = fastqread(yourfile)
To apply statistical tools... see the rest of the documentation

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Paola Favaretto
Paola Favaretto 2015-4-9
Can you provide more details?
.fastq files contain sequence and quality information only. Would you like to plot quality vs. position?

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