Got it working with the code below:
InputFolder = fullfile(pwd, 'FlatImages');
filePattern = fullfile(InputFolder, '*.bmp');
BmpFiles = dir(filePattern);
OutputFolder = fullfile(pwd, 'SegmentedImages');
for i=1:length(BmpFiles)
fname = BmpFiles(i).name;
FullFileNameInput=fullfile(InputFolder, fname);
A=imread(FullFileNameInput);
[s f]=get_white_edges2(A);
Fname_out=['WE_' fname];
%FullFileNameOutput=fullfile(OutputFolder);
figure; imshow(A); hold on; plot([s f]);
FullFileNameOutput=fullfile(OutputFolder, Fname_out);
print(gcf, '-dbmp', FullFileNameOutput);
end