Global fitting of two different function with shared parameters on two different data sets

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Hayao
Hayao 2023-2-1
评论： Hayao 2023-2-2
I am trying to generate a script to fit two different (tediously long) functions that describes two different properties of a certain experimental object. The two functions shares six fitting paremeters and is a function of "T". I have two data sets for each of those respective functions and I am trying to global fit them.
I searched around Matlab answers and found a code that seemingly did what I wanted to do (https://www.mathworks.com/matlabcentral/answers/496168-fitting-2-data-sets-simultaneously-using-two-different-equations-with-some-shared-fit-parameters). And then I made the following code:
syms kB hhat AT1 dG
kB = 0.695034800;
hhat = 5.308959927e-12;
AT1 = 50;
dG = 800;
%Data sets
Adata = [0.48; 0.50; 0.52; 0.7; 0.75; 0.81; 0.82];
Bdata = [8.9e-4; 8.9e-4; 8.8e-4; 8.75e-4; 8.6e-4; 8.5e-4; 7.9e-4];
GFD = [Adata, Bdata];
T = (100:50:400); %T range
%Symbols
%X(1) parameter 1
%X(2) parameter 2
%X(3) parameter 3
%X(4) parameter 4
%X(5) parameter 5
%X(6) parameter 6
%Fitting function
GFF = @(X,T) [X(3)*(X(1)*((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)-dG)^2/(4*X(6)*kB*T)))+X(2)*(AT1+((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)-dG)^2/(4*X(6)*kB*T)))))/((AT1+((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)-dG)^2/(4*X(6)*kB*T))))*(X(3)+X(4)+((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)+dG)^2/(4*X(6)*kB*T))))-((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)+dG)^2/(4*X(6)*kB*T)))*((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)-dG)^2/(4*X(6)*kB*T)))), 2/(AT1+((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)-dG)^2/(4*X(6)*kB*T)))+X(3)+X(4)+((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)+dG)^2/(4*X(6)*kB*T)))-((AT1+((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)-dG)^2/(4*X(6)*kB*T)))-X(3)-X(4)-((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)+dG)^2/(4*X(6)*kB*T))))^2+4*((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)+dG)^2/(4*X(6)*kB*T)))*((2*pi/hhat)*X(5)*(4*pi*X(6)*kB*T)^(-1/2)*exp(-(X(6)-dG)^2/(4*X(6)*kB*T))))^(1/2))];
%Root Mean Squared
RMS = @(X) rms(GFD - GFF(X,T));
options = optimset('MaxFunEvals', 1000000, 'MaxIter',1000000, 'Display', 'off', 'TolX', 1e-5);
FIT = fminsearch(RMS,[0.9 0.5 400 400 1e-6 1500],options);
I have two problem here.
1) The stopping criteria (TolX) is different for two functions, but I don't know how to specify that in my code.
2) The bigger problem, is that the it returns an error, "Incorrect dimensions for raising a matrix to a power. Check that the matrix is square and the power is a scalar. To perform elementwise matrix powers, use '.^'."
I am assuming there's a problem in the last fminsearch command with its compatibility with what I'm trying to do, but I have no idea what I need to do.
Could someone help, please? Thank you.

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采纳的回答

Walter Roberson
Walter Roberson 2023-2-1
your T is a vector. Your function involves an expression of T, then ^(1/2) . With T being nonscalar, the ^ operator is the Matrix Power operator, so you are asking for the matrix square root. But matrix power only works for square matrices, not for vectors. You need the .^ operation
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显示 2更早的评论
Torsten
Torsten 2023-2-1
I called your objective function with your vector of initial values for the parameters and it could not be evaluated (see above).
RMS must return a scalar value that usually is the sum of squared differences between your measurement data and the fitted data,
Hayao
Hayao 2023-2-2
I see, thanks. I instead used 2-norm. I also need to use constraints for physically valid reason so I used fmincon instead. This is the code:
syms kB hhat AT1 dG
kB = 0.695034800;
hhat = 5.308959927e-12;
AT1 = 50;
dG = 800;
%Data sets
Adata = [0.48; 0.50; 0.52; 0.7; 0.75; 0.81; 0.82];
Bdata = [8.9e-4; 8.9e-4; 8.8e-4; 8.75e-4; 8.6e-4; 8.5e-4; 7.9e-4];
GFD = [Adata, Bdata];
T = (100:50:400).'
%Symbols
%X(1) Parameter 1
%X(2) Parameter 2
%X(3) Parameter 3
%X(4) Parameter 4
%X(5) Parameter 5
%X(6) Parameter 6
%Fitting function
GFF = @(X,T) [X(3).*(X(1).*((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)-dG).^2./(4.*X(6).*kB.*T)))+X(2).*(AT1+((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)-dG).^2./(4.*X(6).*kB.*T)))))./((AT1+((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)-dG).^2./(4.*X(6).*kB.*T)))).*(X(3)+X(4)+((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)+dG).^2./(4.*X(6).*kB.*T))))-((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)+dG).^2./(4.*X(6).*kB.*T))).*((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)-dG).^2./(4.*X(6).*kB.*T)))), 2./(AT1+((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)-dG).^2./(4.*X(6).*kB.*T)))+X(3)+X(4)+((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)+dG).^2./(4.*X(6).*kB.*T)))-((AT1+((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)-dG).^2./(4.*X(6).*kB.*T)))-X(3)-X(4)-((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)+dG).^2./(4.*X(6).*kB.*T)))).^2+4.*((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)+dG).^2./(4.*X(6).*kB.*T))).*((2.*pi/hhat).*X(5).*(4.*pi.*X(6).*kB.*T).^(-1/2).*exp(-(X(6)-dG).^2./(4.*X(6).*kB.*T)))).^(1/2))];
%Root Mean Squared
SE = @(X) norm(GFD - GFF(X,T));
options = optimset('MaxFunEvals', 1000000, 'MaxIter',1000000, 'Display', 'off', 'TolX', 1e-5);
FIT = fmincon(SE,[0.9 0.1 400 400 1e-6 1500],[],[],[],[],[0 0 0 0 0 0], [1,1, 2000, 2000, 10000, 100000], [], options);
And now it worked. I now have a separate question, so I will post them as a new question.

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