I found a workaround: The problem arises when this FiM value is fed back into an "in" port of another block, where (for a continuous signal) the sampling time should be [0, 0] but is wrongly inherited as [0, 1] from this FiM thing.
If you manually set the sampling time of this in port to [0, 0], simulink does not seem to be complaining anymore.
I would still be interested if anyone knows more about this FiM business (or if this is a bug), as I find it very strange.