There are several ways to do this, but if you're wanting cell arrays, I'd do something like this:
for i = 1:length(Location) % this allows for different size location arrays
area{i} = input(['Input area for Location ' num2str(i) ': ']);
depth{i} = input(['Input depth for Location ' num2str(i) ': ']);
end
That will get you all you need, however it won't ensure that the proper type of data is input into those arrays. You may want to run some checks in there to ensure that the inputs are numbers and valid values (ie not negative).
