The problem is MATLAB only allows one to implement parfor when all indexes in a loop is done in terms of the loop variable.
Note - this is only true for variables on which indexed assignment is performed. For indexed lookup, you don't have that restriction.
If speed is a priority, then the way you've organized your data - splitting it across elements of a structure array - is working against you. A lot of the work in your loop could be done in single, vectorized statements if the fields were concatentated into arrays of their own. For example, if you were to put all totalVisibleCount data in a vector of its own, you could update it without looping at all, just using the statements,
trackIndices = assignments(:, 1);
detectionIndices = assignments(:, 2);
totalVisibleCount(trackIndices)= totalVisibleCount(trackIndices)+1;
The only thing that really might require a loop is the call to correct(). This can be reduced to a parfor loop as follows, using a similar technique as we discussed in your previous thread.
KalmanFilters={tracks_Out(trackIndices).kalmanFilter};
Centroids = centroids(detectionIndices, :);
parfor i=1:length(KalmanFilters)
correct(KalmanFilters{i}, Centroids(i,:) );
end
although it's not entirely clear to me what correct() is doing because your code shows no output arguments.
