File Formats in Bioinformatics Toolbox
11 次查看(过去 30 天)
显示 更早的评论
I'm interested in trying the bioinformatics toolbox. Is there a way to load a .vcf file into this toolbox, such as those generated from the 1000 Genomes Project? My own data is in Plink bed/bim/fam format, which would also be convenient to load in, although I can convert this to the standard .vcf.
0 个评论
回答(2 个)
Walter Roberson
2017-10-24
https://github.com/neurospin/plinkio is a python package for reading that format, that you could probably call from MATLAB.
0 个评论
Achal Mahajan
2022-6-1
编辑:Achal Mahajan
2022-6-1
Hi Hary,
It depends on what kind of analysis you are interested in, but genomics viewer does support .vcf format (link).
-Achal
0 个评论
另请参阅
类别
在 Help Center 和 File Exchange 中查找有关 Genomics and Next Generation Sequencing 的更多信息
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!