Removing image outliers from average images using if loop?

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Robert Roy
Robert Roy 2017-10-24
Hi there, what I am trying to do is i have a set of averaged images, I more or less the position of the max value. I want to set up an if loop to then remove these images from the average image?
if true
imgindex = numim0:numimages
imxstruct = readimx(fullfile(stemgating, sprintf('B%05d.im7', imgindex)));
img = imxstruct.Frames{1}.Components{1}.Planes{1};
FUNC=@(x)max(x(:));
img1=medfilt2(img,[3 3]);
LIIimages{imgindex}= flip(imrotate((img1),-90),2)
end
LIIimages=cat(3,LIIimages{:});
meanimg=mean(LIIimages,3);
meanimg1=meanimg1+meanimg;
end
AverageImage=(meanimg1/(numimages+1numim0))

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