I found a better way to address the problem. In order to find the highest peak in another array of similar numbers (to find the corresponding frequency), I just used the find() function.
What I mean is say I got the highest two peaks from a signal. Then, in the Amplitude Spectrum-Frequency Plot, I used the find() function in the Amplitude Spectrum in order to find the location highest two peaks in the spectrum. To find the corresponding frequencies I used frequencies(whatever indices I found).