Unexpected image size: All images must have the same size.

Question

Andre Brandao 2019-7-5

0
链接

此问题的直接链接

https://ww2.mathworks.cn/matlabcentral/answers/470447-unexpected-image-size-all-images-must-have-the-same-size

评论： Mohamed Nasr 2020-4-28

Hi, I'm having some problems with a bench of chest xray images. I tryed to use the code from the link below, but it did not work.

https://www.mathworks.com/matlabcentral/answers/385472-error-in-image-size

Error using trainNetwork (line 165)

Unexpected image size: All images must have the same size.

Error in chestXray1 (line 49)

net = trainNetwork(imdsTrain,layers,options);

inputSize = [224 224 1];
numClasses = 2;
layers = [
    imageInputLayer(inputSize)
    convolution2dLayer(5,20)
    batchNormalizationLayer
    reluLayer
    fullyConnectedLayer(numClasses)
    softmaxLayer
    classificationLayer];
options = trainingOptions('sgdm', ...
    'MaxEpochs',3, ...
    'ValidationData',imdsValidation, ...
    'ValidationFrequency',30, ...
    'Verbose',false, ...
    'Plots','training-progress');
net = trainNetwork(imdsTrain,layers,options);

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Andre Brandao 2019-7-5

在 MATLAB Online 中打开

So, I'm using the example of mnist digits for the Chest Xray images. The out put is:

Error using trainNetwork (line 165)

Unexpected image size: All images must have the same size.

Error in chestXray1 (line 49)

net = trainNetwork(imdsTrain,layers,options);

Then I tryed to use the solutation that was gave in that link to adjust the images in an appropriate way, and didn`t work.

Code below:

ext = 'png';        %adjust as appropriate
projectdir = 'Some\Appropriate\Directory';
dinfo = dir(fullfile(projectdir, '**', ['.' ext]);
allfiles = fullfile({dinfo.folder}, {dinfo.name});
for K = 1 : length(allfiles)
  thisfile = allfiles{K};
  try
    thisinfo = imfinfo(thisfile);
    if ~isfield(thisinfo, 'Width') || ~isfield(thisinfo, 'Height') || ~isfield(thisinfo, 'SamplesPerPixel')
      fprintf('image information for file "%s" is missing width or height or #channels\n', thisfile);
    else
      if thisinfo.Width ~= 227
        fprintf('File "%s" width expected 227 got %d\n', thisfile, thisinfo.Width);
      end
      if thisinfo.Height ~= 227
        fprintf('File "%s" height expected 227 got %d\n', thisfile, thisinfo.Height);
      end
      if thisinfo.SamplesPerPixel ~= 3
        fprintf('File "%s" expected 3 color channels, got %d\n', thisfile, thisinfo.SamplesPerPixel);
      end
    end
  catch ME
    fprintf('Could not get image information for file "%s"', thisfile);
  end
end

Geoff Hayes 2019-7-8

在 MATLAB Online 中打开

Andre - but what do you mean by it didn't work. Did you get any errors? Was there any output from running the above code? I'm guessing that there must have been since the code is checking for images of dimensions 227x227x3 and you are interested in images of 224x224x1. You will need to modify the code to check for your dimensions...and modify the code so that it looks in the appropriate directory assuming your folder of png (?) images is not 'Some\Appropriate\Directory'. At the very least, you will need to change the following in the code

projectdir = 'Some\Appropriate\Directory';

must be a valid folder/directory on your computer where your images are.

  if thisinfo.Width ~= 227
    fprintf('File "%s" width expected 227 got %d\n', thisfile, thisinfo.Width);
  end
  if thisinfo.Height ~= 227
    fprintf('File "%s" height expected 227 got %d\n', thisfile, thisinfo.Height);
  end
  if thisinfo.SamplesPerPixel ~= 3
    fprintf('File "%s" expected 3 color channels, got %d\n', thisfile, thisinfo.SamplesPerPixel);
  end

In the above, you need to change the dimensions to match those that you are interested in.

ext = 'png';

Are your chest xrays pngs or some other format?

Andre Brandao 2019-7-9

编辑：Geoff Hayes 2019-7-9

在 MATLAB Online 中打开

Hi, thank for reply. I want 1 channel with 224x224. I've already adjusted the images to 224x224x1. The images are in jpeg format, maybe I need to convert to png. But also need help to do that. When I try to compile the code it stops and gives me that message:

Error using trainNetwork (line 165)
Unexpected image size: All images must have the same size.
Error in chestXray1 (line 49)
net = trainNetwork(imdsTrain,layers,options);
----------------------------------------------------------------
below the code I''m using to:
%%  Carregar dados
dataChest = fullfile('/Users/andrebr4/Documents/MATLAB/chestXray/chest_xray');
imds = imageDatastore(dataChest, ...
    'IncludeSubfolders',true, ...
    'LabelSource','foldernames');
%%  Dividir o conjunto de dados em cada categoria
numTrainingFiles = 750;
[imdsTrain,imdsValidation] = splitEachLabel(imds,numTrainingFiles,'randomize');
%%  Configurar a rede neural
inputSize = [224 224 1];
numClasses = 2;
layers = [
    imageInputLayer(inputSize)
    convolution2dLayer(5,20)
    batchNormalizationLayer
    reluLayer
    fullyConnectedLayer(numClasses)
    softmaxLayer
    classificationLayer];
%%  Opções de treino
options = trainingOptions('sgdm', ...
    'MaxEpochs',5, ...
    'ValidationData',imdsValidation, ...
    'ValidationFrequency',30, ...
    'Verbose',false, ...
    'Plots','training-progress');
%% Treinar a rede neural
net = trainNetwork(imdsTrain,layers,options);
%%  Executar rede treinada no conjunto de teste
YPred = classify(net,imdsValidation);
YValidation = imdsValidation.Labels;
%% Calcular a precisão
accuracy = sum(YPred == YValidation)/numel(YValidation)

Geoff Hayes 2019-7-9

在 MATLAB Online 中打开

Andre - what is the output when you run the following code

ext = 'jpeg';        %adjust as appropriate
projectdir = '/Users/andrebr4/Documents/MATLAB/chestXray/chest_xray';
dinfo = dir(fullfile(projectdir, '**', ['.' ext]);
allfiles = fullfile({dinfo.folder}, {dinfo.name});
for K = 1 : length(allfiles)
  thisfile = allfiles{K};
  try
    thisinfo = imfinfo(thisfile);
    if ~isfield(thisinfo, 'Width') || ~isfield(thisinfo, 'Height') || ~isfield(thisinfo, 'SamplesPerPixel')
      fprintf('image information for file "%s" is missing width or height or #channels\n', thisfile);
    else
      if thisinfo.Width ~= 224
        fprintf('File "%s" width expected 224 got %d\n', thisfile, thisinfo.Width);
      end
      if thisinfo.Height ~= 224
        fprintf('File "%s" height expected 224 got %d\n', thisfile, thisinfo.Height);
      end
      if thisinfo.SamplesPerPixel ~= 1
        fprintf('File "%s" expected 1 color channels, got %d\n', thisfile, thisinfo.SamplesPerPixel);
      end
    end
  catch ME
    fprintf('Could not get image information for file "%s"', thisfile);
  end
end

Andre Brandao 2019-7-9

is missing width or height or #channels

Geoff Hayes 2019-7-9

在 MATLAB Online 中打开

try putting a breakpoint at the line

allfiles = fullfile({dinfo.folder}, {dinfo.name});

and then run the code. When the debugger pauses at thisline, step through the subsequent lines. What is thisfile set to? What is thisinfo?

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Answer 1

Dheeraj Singh 2019-8-5

7
链接

此回答的直接链接

https://ww2.mathworks.cn/matlabcentral/answers/470447-unexpected-image-size-all-images-must-have-the-same-size#answer_386253

You can use augmentedImageDataStore to resize all images to same size.

Use the following code for your problem:

dataChest = fullfile('/Users/andrebr4/Documents/MATLAB/chestXray/chest_xray');
imds = imageDatastore(dataChest, ...
    'IncludeSubfolders',true, ...
    'LabelSource','foldernames');
%%  Dividir o conjunto de dados em cada categoria
numTrainingFiles = 750;
[imdsTrain,imdsValidation] = splitEachLabel(imds,numTrainingFiles,'randomize');
%%%%%%%code for resizing
inputSize=[224 224 1];
imdsTrain=augmentedImageDatastore(inputSize, imdsTrain,'ColorPreprocessing','rgb2gray');
imdsValidation=augmentedImageDatastore(inputSize, imdsValidation,'ColorPreprocessing','rgb2gray');
%%  Configurar a rede neural
inputSize = [224 224 1];
numClasses = 2;
layers = [
    imageInputLayer(inputSize)
    convolution2dLayer(5,20)
    batchNormalizationLayer
    reluLayer
    fullyConnectedLayer(numClasses)
    softmaxLayer
    classificationLayer];
%%  Opções de treino
options = trainingOptions('sgdm', ...
    'MaxEpochs',5, ...
    'ValidationData',imdsValidation, ...
    'ValidationFrequency',30, ...
    'Verbose',false, ...
    'Plots','training-progress');
%% Treinar a rede neural
net = trainNetwork(imdsTrain,layers,options);
%%  Executar rede treinada no conjunto de teste
YPred = classify(net,imdsValidation);
YValidation = imdsValidation.Labels;
%% Calcular a precisão
accuracy = sum(YPred == YValidation)/numel(YValidation)

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Mohamed Nasr 2020-4-28

Hi i have the same problem but with 3channels what i do ?

Mohamed Nasr 2020-4-28

and make error in YPred = classify(net,imdsValidation);

YValidation = imdsValidation.Labels;

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Unexpected image size: All images must have the same size.

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