Join several timetables with different variables and times and duplicates

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bk
bk 2020-2-25
评论： Guillaume 2020-2-26
I'm trying to read a bunch of csv files that each have one variable timeseries. Many files can hold the same variable and there are overlaps in the timestamps (duplicates).
My problem is when trying to merge these csv files, which are read to timetables, into a single timetable.
Example code:
times_TT_A = [datetime(2019,01,01) datetime(2019,01,02) datetime(2019,01,03)]';
data_TT_A = [1 2 3]';
TT_A = timetable(times_TT_A, data_TT_A,'VariableNames',{'Variable_ONE'});
times_TT_B = [datetime(2019,01,01) datetime(2019,01,02)]';
data_TT_B = [10 20]';
TT_B = timetable(times_TT_B, data_TT_B,'VariableNames',{'Variable_TWO'});
times_TT_C = [datetime(2019,01,02) datetime(2019,01,03)]';
data_TT_C = [20 30]';
TT_C = timetable(times_TT_C, data_TT_C,'VariableNames',{'Variable_TWO'});
So here there are two different variables and one variable, Variable_TWO, has overlap in timestamps.
I would like to have this result:
times_TT_A Variable_ONE Variable_TWO
__________ ____________ _________________
2019-01-01 1 10
2019-01-02 2 20
2019-01-03 3 30
I don't mind a solution with duplicate entries, I can sort those out later, for example this is also fine:
times_TT_A Variable_ONE Variable_TWO
__________ ____________ _________________
2019-01-01 1 10
2019-01-02 2 20
2019-01-03 3 NaN
2019-01-02 NaN 20
2019-01-03 NaN 30
The csv files are read in a loop and should then one by one be added to the common timetable like this in pseudocode
timetable_alldata = timetable()
for csvfile in csvfiles
timetable_csv = readtable(csvfile)
timetable_alldata = join(timetable_alldata, timetable_csv)
end
This is then the same as calling this using the example data - here using outerjoin:
outerjoin(outerjoin(TT_A,TT_B), TT_C)
ans =
3×3 timetable
times_TT_A Variable_ONE Variable_TWO_left Variable_TWO_TT_C
__________ ____________ _________________ _________________
2019-01-01 1 10 NaN
2019-01-02 2 20 20
2019-01-03 3 NaN 30
I have tried stacking ([A; B]), vertcat, outerjoin and synchronize...but I seem to be stuck here.
Any suggestions how to solve this?
  3 个评论
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Lei Hou
Lei Hou 2020-2-25
I have another clarification question. TT_B and TT_C both have the same row: 02-Jan-2019 20. If there are duplicated rows like this, do you want only keep one row?
bk
bk 2020-2-25
Yes, the variable names need to match - they are not random.
And I only want to keep one row. The duplicated rows are always "true" duplicates with same timestamp and value. Sorting duplicates I guess will be relatively easy, so that can be done afterwards if the merging results in duplicates.

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采纳的回答

Lei Hou
Lei Hou 2020-2-26
Hi,
I came up with two solutions.
Solution 1: use outerjoint. It is easy to understand but have duplicated rows that need to be merged.
% Make the header of row times of input timetables to be the same
TT_A.Properties.DimensionNames{1} = 'Time';
TT_B.Properties.DimensionNames{1} = 'Time';
TT_C.Properties.DimensionNames{1} = 'Time';
% call outerjoin and merge keys
TT_AB = outerjoin(TT_A,TT_B, ...
'Keys',['Time' intersect(TT_A.Properties.VariableNames,TT_B.Properties.VariableNames)], ...
'MergeKeys',true)
TT_ABC = outerjoin(TT_AB,TT_C,...
'Keys',['Time' intersect(TT_AB.Properties.VariableNames,TT_C.Properties.VariableNames)], ...
'MergeKeys',true)
TT_ABC =
4x2 timetable
Time Variable_ONE Variable_TWO
____________________ ____________ ____________
01-Jan-2019 00:00:00 1 10
02-Jan-2019 00:00:00 2 20
03-Jan-2019 00:00:00 NaN 30
03-Jan-2019 00:00:00 3 NaN
Solution 2: Make use of assignment. This makes the strong assumption that the duplicate rows are really duplicates. So no need to post-process the result.
TTcell = {TT_A TT_B TT_C};
TT = timetable();
for i = 1:length(TTcell)
TT_i = TTcell{i};
TT(TT_i.Time,TT_i.Properties.VariableNames) = TT_i;
end
TT =
3x2 timetable
Time Variable_ONE Variable_TWO
___________ ____________ ____________
01-Jan-2019 1 10
02-Jan-2019 2 20
03-Jan-2019 3 30
  2 个评论
bk
bk 2020-2-26
Thanks!
I'm gonna go for solution 1 here for now. I find it a bit more readable, and a little faster it seem as well.
Solution two would work great in this case since its always true duplicates - but it has a little caveat when one of the variables have missing data for a timestamp. Matlab seem to insist that zero is a good value to fill tables. Any idea how to set default fill value to NaN, without prepopulating the table?
Example
times_TT_A = [datetime(2019,01,01) datetime(2019,01,02) datetime(2019,01,03)]';
data_TT_A = [1 2 3]';
TT_A = timetable(times_TT_A, data_TT_A,'VariableNames',{'Variable_ONE'});
times_TT_B = [datetime(2019,01,01) datetime(2019,01,02)]';
data_TT_B = [10 20]';
TT_B = timetable(times_TT_B, data_TT_B,'VariableNames',{'Variable_TWO'});
times_TT_C = [datetime(2019,01,02) datetime(2019,01,03) datetime(2019,01,04)]';
data_TT_C = [20 30 40]';
TT_C = timetable(times_TT_C, data_TT_C,'VariableNames',{'Variable_TWO'});
TTcell = {TT_A TT_B TT_C};
TT = timetable();
for i = 1:length(TTcell)
TT_i = TTcell{i};
TT(TT_i.Time,TT_i.Properties.VariableNames) = TT_i;
end
TT =
4×2 timetable
Time Variable_ONE Variable_TWO
___________________ ____________ ____________
2019-01-01 00:00:00 1 10
2019-01-02 00:00:00 2 20
2019-01-03 00:00:00 3 30
2019-01-04 00:00:00 0 40
Guillaume
Guillaume 2020-2-26
Any idea how to set default fill value to NaN, without prepopulating the table?
It's not possible. The default fill value is the default fill value for the datatype, which for numeric types is 0. You get the same behaviour with plain arrays:
x = [];
x(5) = 8; %x(1:4) gets filled with 0

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更多回答（1 个）

Guillaume
Guillaume 2020-2-26
With your example tables, this is trivially achieved with:
synchronize(TT_A, [TT_B; TT_C])
  3 个评论
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Lei Hou
Lei Hou 2020-2-26
Try me solution of using outerjoin, it doesn't require priori knowledge of the variables in the CSV file and their order. Please let me know if my solution doesn't work for you. I'm happy to help you.
Guillaume
Guillaume 2020-2-26
I must admit I didn't read the whole question. Yes, this won't work for what you want. If Lei's solution doesn't work, then you can always do it the 'old fashioned way' (before timetables and tables existed) with intersect and co. A bit more work but still fairly simple. I can work out the code if it's needed.

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