How to remove this error?

Question

Muhammad Adeel Ahsan Awan 2020-6-20

0
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此问题的直接链接

https://ww2.mathworks.cn/matlabcentral/answers/551929-how-to-remove-this-error

回答： Star Strider 2020-6-20

I am having the error Undefined function or variable 'slidePtr'. Kindly help and tell me why is it so?

Generate image data info. Note that image files with sample code not 
% equal to '01' (means solid tumor) are excluded. And we also excluded 
% images with 5x magnification. One patient may have multiple slides (1 to 3).
% ==image data info
% imageInfo.file: list(i).name is 'folder/imageFilename'. Files are ranked
%   according to the order of the first 15 letters of the barcode
% imageInfo.pid: cell array of strings containing patient ID of each image 
%   file, the first 15 letters of barcode.
% imageInfo.mppX: 
% imageInfo.mppY:
% imageInfo.width:
% imageInfo.height:
% imageInfo.mag: manification
%clear
tic
%% generate imageInfo.file, imageInfo.pid
dirData = 'C:\image-mRNA-prognostic-model-master\bin.png';
list = dir(dirData);
list = list(3:end);
nList = numel(list);
imageInfo.file = cell(nList, 1);
imageInfo.pid = cell(nList, 1);
tissue = cell(nList, 1);
for i = 1:nList
    sublist = dir([dirData, list(i).name, '/*.svs']);
    tissue{i} = sublist.name(14:15);
    imageInfo.file{i} = [list(i).name, '/', sublist.name];
    imageInfo.pid{i} = sublist.name(1:15);
    fprintf('%d/%d finished\n', i, nList);
end
% remove non-solid tumor files (sample code ~= 01)
indTumor = strcmp(tissue, '01');
imageInfo.file = imageInfo.file(indTumor);
imageInfo.pid = imageInfo.pid(indTumor);
% sort
[imageInfo.pid, ind] = sort(imageInfo.pid);
imageInfo.file = imageInfo.file(ind);
%% generate imageInfo.mppX, imageInfo.mppY, imageInfo.width
%  imageInfo.height, and imageInfo.mag
% Load openslide library
openslide_load_library();
nFiles = numel(imageInfo.file);
imageInfo.mppX = zeros(nFiles, 1);
imageInfo.mppY = zeros(nFiles, 1);
imageInfo.width = zeros(nFiles, 1);
imageInfo.height = zeros(nFiles, 1);
imageInfo.mag = zeros(nFiles, 1);
for i = 1:nFiles    
    % Open whole-slide image
    slidePtr = openslide_open([dirData, imageInfo.file{i}]);
    % Get whole-slide image properties
    [imageInfo.mppX(i, 1),...
        imageInfo.mppY(i, 1),...
        imageInfo.width(i, 1),...
        imageInfo.height(i, 1),...
        numberOfLevels,...
        downsampleFactors,...
        imageInfo.mag(i, 1)] = openslide_get_slide_properties(slidePtr);
    fprintf('%d/%d finished\n', i, nFiles);
end
toc
% Close whole-slide image, note that the slidePtr must be removed manually
openslide_close(slidePtr )
clear slidePtr
% Unload library
openslide_unload_library
imageInfo = struct2table(imageInfo);
% remove images with 5x magnification
indOk = imageInfo.mag ~= 5;
imageInfo = imageInfo(indOk, :);
save imageInfo imageInfo