How to create a confusion matrix?

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I am trying to use the example from mathworks, identifying significant features and classifying protein profiles, to create a confusion matrix. I am having difficulties identifying what the true values and predicted would be when looking at the PCA-LDA. Can someone help me identify them?
Link below:
https://www.mathworks.com/help/bioinfo/ug/identifying-significant-features-and-classifying-protein-profiles.html#d122e20387

回答(1 个)

Pankhuri Kasliwal
Pankhuri Kasliwal 2020-10-8
Hi,
This can be done using the "plotconfusion" function. By default, this command will also plot the True Positive, False Negative, Positive Predictive, and False Discovery rates in they grey-colored boxes. Please refer to the following example:
targetsVector = [1 2 1 1 3 2]; % True classes
outputsVector = [1 3 1 2 3 1]; % Predicted classes
% Convert this data to a [numClasses x 6] matrix
targets = zeros(3,6);
outputs = zeros(3,6);
targetsIdx = sub2ind(size(targets), targetsVector, 1:6);
outputsIdx = sub2ind(size(outputs), outputsVector, 1:6);
targets(targetsIdx) = 1;
outputs(outputsIdx) = 1;
% Plot the confusion matrix for a 3-class problem
plotconfusion(targets,outputs)
The class labels can be customized by setting that 'XTickLabel' and 'YTickLabel' properties of the axis:
h = gca;
h.XTickLabel = {'Class A','Class B','Class C',''};
​​h.YTickLabel = {'Class A','Class B','Class C',''};
h.YTickLabelRotation = 90;
To know more about true values and predicted values, refer to the following links -

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