getpdb doesn't work anymore - shutdown on 9th december 2020 - How to replace it?

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Karolina Cicha
Karolina Cicha 2020-12-10
回答： Karolina Cicha 2020-12-12
Hello,
I was using information from protein data bank in my project.
It was quite simple I just have to write:
S = getpdb('1CIV')
Unfortunately yesterday (9th dec) I got message:
The server returned the status 404 with message "Not Found" in response to the request to URL
http://www.rcsb.org/pdb/downloadFile.do?fileFormat=pdb&compression=NO&structureId=1CIV.
When I check the site it shows me
It has been permanently removed as part of our announced shutdown on December 9th, 2020.
Apparently there is new json-based API. I'm not sure how to use it in matlab.
Do you have any ideas where I should start? What I should read to learn how to use it in matlab? There are some links on the site but I don't quite understand them(https://data.rcsb.org/#data-api) (http://www.rcsb.org/pages/webservices)
I would be very grateful for any points because big part of my student project just fell apart
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Rik
Rik 2020-12-12
You should post your solution as an answer and accept it. That way others can find the solution much more easily.

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采纳的回答

Karolina Cicha
Karolina Cicha 2020-12-12
websave('1CIV.pdb', 'https://files.rcsb.org/download/1CIV.pdb');
x = pdbread('1CIV.pdb')

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