MATLAB crashes when running in a parallel bash mode

Question

Alessandro Maria Laspina 2021-2-23

0
链接

此问题的直接链接

https://ww2.mathworks.cn/matlabcentral/answers/753549-matlab-crashes-when-running-in-a-parallel-bash-mode

编辑： Alessandro Maria Laspina 2021-2-23

hs_error_pid25593.txt

在 MATLAB Online 中打开

Hello,

bear with me for a few paragraphs while I explain the background of the problem as this is a meta-programming issue.

I have a bash script that I use to run MATLAB that looks like this:

xargs -P25 -d'\n' -I{} -t matlab -nodisplay -nodesktop -r "try;runinput={};MD_script_DoE_mass_time_RLV_Ncvx_SOCP1_14;end;exit" < MD_list_DoE_mass_time_RLV_Ncvx_SOCP1_14.txt

MD_script_DoE_mass_time_RLV_Ncvx_SOCP1_14 is a script file that contains a process, which uses the input case from MD_list_DoE_mass_time_RLV_Ncvx_SOCP1_14.txt. The bash script is reading line by line this text file, which really just contains numbers in descending order from 1 to 25. The script file then reads this as a variable called runinput and starts the process (I have a table in the matlab script file that gives the inputs to all the other variables of the problem based on a value from 1 to 25).

When I run the bash script, out of all the 25 processes, only 4 make it through. I get a whole bunch of errors for the others that indicate the following:

--------------------------------------------------------------------------------
              Assertion detected at Tue Feb 23 09:52:13 2021 +0100
--------------------------------------------------------------------------------
Configuration:
  Crash Decoding           : Disabled - No sandbox or build area path
  Crash Mode               : continue (default)
  Default Encoding         : UTF-8
  Deployed                 : false
  GNU C Library            : 2.26 stable
  Graphics Driver          : Unknown software 
  Graphics card 1          : 0x102b ( 0x102b ) 0x534 Version 0.0.0.0 (0-0-0)
  Java Version             : Java 1.8.0_202-b08 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
  MATLAB Architecture      : glnxa64
  MATLAB Entitlement ID    : 846377
  MATLAB Root              : /usr/local/MATLAB/R2020a
  MATLAB Version           : 9.8.0.1538580 (R2020a) Update 6
  OpenGL                   : software
  Operating System         : "openSUSE Leap 15.0"
  Process ID               : 25593
  Processor ID             : x86 Family 6 Model 63 Stepping 2, GenuineIntel
  Session Key              : 20b9f250-ca98-4381-93f5-fb19d35701c2
  Static TLS mitigation    : Disabled: Unnecessary
  Window System            : No active display
Fault Count: 1
Additional Log Files:
  Java Crash Report        : /cala/alessandro/hs_error_pid25593.log
  Java Log                 : /cala/alessandro/java.log.25593
Assertion in void {anonymous}::mwJavaAbort() at javainit.cpp line 1395:
Fatal Java Exception. See this file for details: /cala/alessandro/hs_error_pid25593.log
Register State (captured):
  RAX = 0000000000000000  RBX = 00007f8c25c400a8
  RCX = 000000000000000a  RDX = 00007f8c25c1f698
  RSP = 00007f8aac223c50  RBP = 00007f8aac224010
  RSI = 00007f8c25be5ff6  RDI = 00007f8aac223c60
   R8 = 00007f8aac223f24   R9 = 00007f8aac223f24
  R10 = 00007f8c25be5ff6  R11 = 00007f8aac2243f0
  R12 = 00007f8c25c30028  R13 = 00007f8aac224890
  R14 = 00007f8c11604583  R15 = 00007f8c1160f4c0
  RIP = 00007f8c25b36a4e  EFL = 00007f8aac22416d
   CS = 3d38   FS = ac22   GS = 7f8a
Stack Trace (captured):
[  0] 0x00007f8c25b2d753    /usr/local/MATLAB/R2020a/bin/glnxa64/libmwfl.so+00853843
[  1] 0x00007f8c25b2d94c    /usr/local/MATLAB/R2020a/bin/glnxa64/libmwfl.so+00854348 _ZN10foundation4core4diag15stacktrace_base7captureEm+00000028
[  2] 0x00007f8c25b32b89    /usr/local/MATLAB/R2020a/bin/glnxa64/libmwfl.so+00875401
[  3] 0x00007f8c25b32cf0    /usr/local/MATLAB/R2020a/bin/glnxa64/libmwfl.so+00875760
[  4] 0x00007f8c115b07ee /usr/local/MATLAB/R2020a/bin/glnxa64/matlab_startup_plugins/jmi/../../../../bin/glnxa64/libmwjmi.so+01415150
[  5] 0x00007f8c08bb2700 /usr/local/MATLAB/R2020a/sys/java/jre/glnxa64/jre/lib/amd64/server/libjvm.so+09496320
[  6] 0x00007f8c08d77683 /usr/local/MATLAB/R2020a/sys/java/jre/glnxa64/jre/lib/amd64/server/libjvm.so+11351683
[  7] 0x00007f8c087844c7 /usr/local/MATLAB/R2020a/sys/java/jre/glnxa64/jre/lib/amd64/server/libjvm.so+05113031
[  8] 0x00007f8c08bb3e86 /usr/local/MATLAB/R2020a/sys/java/jre/glnxa64/jre/lib/amd64/server/libjvm.so+09502342
[  9] 0x00007f8c08bab74f /usr/local/MATLAB/R2020a/sys/java/jre/glnxa64/jre/lib/amd64/server/libjvm.so+09467727
[ 10] 0x00007f8c08bb53c8 /usr/local/MATLAB/R2020a/sys/java/jre/glnxa64/jre/lib/amd64/server/libjvm.so+09507784
[ 11] 0x00007f8c08d1fc0e /usr/local/MATLAB/R2020a/sys/java/jre/glnxa64/jre/lib/amd64/server/libjvm.so+10992654
[ 12] 0x00007f8c08bb18c2 /usr/local/MATLAB/R2020a/sys/java/jre/glnxa64/jre/lib/amd64/server/libjvm.so+09492674
[ 13] 0x00007f8c2795d569                             /lib64/libpthread.so.0+00030057
[ 14] 0x00007f8c270fca2f                                   /lib64/libc.so.6+01018415 clone+00000063

I also get an error on the ssh machine which I have attached since its too long to show here.

What is causing this issue? I have done some sample runs on my laptop with a few different runInput cases and it runs fine. It's a little bit tedious to debug the issue seeing as there are a lot of files involved and I don't run these processes with a GUI.