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Hans Scharler
Hans Scharler
Last activity 2024-5-31

Time for Tulips

Spring is here in Natick and the tulips are blooming! While tulips appear only briefly here in Massachusetts, they provide a lot of bright and diverse colors and shapes. To celebrate this cheerful flower, here's some code to create your own tulip!
https://blogs.mathworks.com/matlab/2024/05/15/celebrating-spring-matlab-tulip
How to leave feedback on a doc page
Leaving feedback is a two-step process. At the bottom of most pages in the MATLAB documentation is a star rating.
Start by selecting a star that best answers the question. After selecting a star rating, an edit box appears where you can offer specific feedback.
When you press "Submit" you'll see the confirmation dialog below. You cannot go back and edit your content, although you can refresh the page to go through that process again.
Tips on leaving feedback
  • Be productive. The reader should clearly understand what action you'd like to see, what was unclear, what you think needs work, or what areas were really helpful.
  • Positive feedback is also helpful. By nature, feedback often focuses on suggestions for changes but it also helps to know what was clear and what worked well.
  • Point to specific areas of the page. This helps the reader to narrow the focus of the page to the area described by your feedback.
What happens to that feedback?
Before working at MathWorks I often left feedback on documentation pages but I never knew what happens after that. One day in 2021 I shared my speculation on the process:
> That feedback is received by MathWorks Gnomes which are never seen nor heard but visit the MathWorks documentation team at night while they are sleeping and whisper selected suggestions into their ears to manipulate their dreams. Occassionally this causes them to wake up with a Eureka moment that leads to changes in the documentation.
I'd like to let you in on the secret which is much less fanciful. Feedback left in the star rating and edit box are collected and periodically reviewed by the doc writers who look for trends on highly trafficked pages and finer grain feedback on less visited pages. Your feedback is important and often results in improvements.
Chen Lin
Chen Lin
Last activity 2024-6-9

🌿🐑 Meet MATLAMB 🐑🌿

Drumlin Farm has welcomed MATLAMB, named in honor of MathWorks, among ten adorable new lambs this season!
David
David
Last activity 2024-5-23

Introduced in...

A colleague said that you can search the Help Center using the phrase 'Introduced in' followed by a release version. Such as, 'Introduced in R2022a'. Doing this yeilds search results specific for that release.
Seems pretty handy so I thought I'd share.
Chen Lin
Chen Lin
Last activity 2024-5-22

Celebrating Spring: MATLAB Tulip

Bringing the beauty of MathWorks Natick's tulips to life through code!
Get the code from @Eric Ludlam.
Remix challenge: create and share with us your new breeds of MATLAB tulips!
I found this plot of words said by different characters on the US version of The Office sitcom. There's a sparkline for each character from pilot to finale episode.
From Alpha Vantage's website: API Documentation | Alpha Vantage
Try using the built-in Matlab function webread(URL)... for example:
% copy a URL from the examples on the site
URL = 'https://www.alphavantage.co/query?function=TIME_SERIES_DAILY&symbol=IBM&apikey=demo'
% or use the pattern to create one
tickers = [{'IBM'} {'SPY'} {'DJI'} {'QQQ'}]; i = 1;
URL = ...
['https://www.alphavantage.co/query?function=TIME_SERIES_DAILY_ADJUSTED&outputsize=full&symbol=', ...
+ tickers{i}, ...
+ '&apikey=***Put Your API Key here***'];
X = webread(URL);
You can access any of the data available on the site as per the Alpha Vantage documentation using these two lines of code but with different designations for the requested data as per the documentation.
It's fun!
Temporary print statements are often helpful during debugging but it's easy to forget to remove the statements or sometimes you may not have writing privileges for the file. This tip uses conditional breakpoints to add print statements without ever editing the file!
What are conditional breakpoints?
Conditional breakpoints allow you to write a conditional statement that is executed when the selected line is hit and if the condition returns true, MATLAB pauses at that line. Otherwise, it continues.
The Hack: use ~fprintf() as the condition
fprintf prints information to the command window and returns the size of the message in bytes. The message size will always be greater than 0 which will always evaluate as true when converted to logical. Therefore, by negating an fprintf statement within a conditional breakpoint, the fprintf command will execute, print to the command window, and evalute as false which means the execution will continue uninterupted!
How to set a conditional break point
1. Right click the line number where you want the condition to be evaluated and select "Set Conditional Breakpoint"
2. Enter a valid MATLAB expression that returns a logical scalar value in the editor dialog.
Handy one-liners
Check if a line is reached: Don't forget the negation (~) and the line break (\n)!
~fprintf('Entered callback function\n')
Display the call stack from the break point line: one of my favorites!
~fprintf('%s\n',formattedDisplayText(struct2table(dbstack)))
Inspect variable values: For scalar values,
~fprintf('v = %.5f\n', v)
Use formattedDisplayText to convert more complex data to a string
~fprintf('%s\n', formattedDisplayText(v)).
Make sense of frequent hits: In some situations such as responses to listeners or interactive callbacks, a line can be executed 100s of times per second. Incorporate a timestamp to differentiate messages during rapid execution.
~fprintf('WindowButtonDownFcn - %s\n', datetime('now'))
Closing
This tip not only keeps your code clean but also offers a dynamic way to monitor code execution and variable states without permanent modifications. Interested in digging deeper? @Steve Eddins takes this tip to the next level with his Code Trace for MATLAB tool available on the File Exchange (read more).
Summary animation
To reproduce the events in this animation:
% buttonDownFcnDemo.m
fig = figure();
tcl = tiledlayout(4,4,'TileSpacing','compact');
for i = 1:16
ax = nexttile(tcl);
title(ax,"#"+string(i))
ax.ButtonDownFcn = @axesButtonDownFcn;
xlim(ax,[-1 1])
ylim(ax,[-1,1])
hold(ax,'on')
end
function axesButtonDownFcn(obj,event)
colors = lines(16);
plot(obj,event.IntersectionPoint(1),event.IntersectionPoint(2),...
'ko','MarkerFaceColor',colors(obj.Layout.Tile,:))
end
Today, he got dressed for work to design some new dog toy-making algorithms. #nationalpetday
Transforming my furry friend into a grayscale masterpiece with MATLAB! 🐾 #MATLABPetsDay ✌️
This is Stella while waiting to see if the code works...
The beautiful and elegant chord diagrams were all created using MATLAB?
Indeed, they were all generated using the chord diagram plotting toolkit that I developed myself:
You can download these toolkits from the provided links.
The reason for writing this article is that many people have started using the chord diagram plotting toolkit that I developed. However, some users are unsure about customizing certain styles. As the developer, I have a good understanding of the implementation principles of the toolkit and can apply it flexibly. This has sparked the idea of challenging myself to create various styles of chord diagrams. Currently, the existing code is quite lengthy. In the future, I may integrate some of this code into the toolkit, enabling users to achieve the effects of many lines of code with just a few lines.
Without further ado, let's see the extent to which this MATLAB toolkit can currently perform.
demo 1
rng(2)
dataMat = randi([0,5], [11,5]);
dataMat(1:6,1) = 0;
dataMat([11,7],1) = [45,25];
dataMat([1,4,5,7],2) = [20,20,30,30];
dataMat(:,3) = 0;
dataMat(6,3) = 45;
dataMat(1:5,4) = 0;
dataMat([6,7],4) = [25,25];
dataMat([5,6,9],5) = [25,25,25];
colName = {'Fly', 'Beetle', 'Leaf', 'Soil', 'Waxberry'};
rowName = {'Bartomella', 'Bradyrhizobium', 'Dysgomonas', 'Enterococcus',...
'Lactococcus', 'norank', 'others', 'Pseudomonas', 'uncultured',...
'Vibrionimonas', 'Wolbachia'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT = [0.7765 0.8118 0.5216; 0.4431 0.4706 0.3843; 0.5804 0.2275 0.4549;
0.4471 0.4039 0.6745; 0.0157 0 0 ];
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [0.5843 0.6863 0.7843; 0.1098 0.1647 0.3255; 0.0902 0.1608 0.5373;
0.6314 0.7961 0.2118; 0.0392 0.2078 0.1059; 0.0157 0 0 ;
0.8549 0.9294 0.8745; 0.3882 0.3255 0.4078; 0.5020 0.7216 0.3843;
0.0902 0.1843 0.1804; 0.8196 0.2314 0.0706];
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListT(j,:), 'FaceAlpha',.5)
end
end
CC.tickState('on')
CC.labelRotate('on')
CC.setFont('FontSize',17, 'FontName','Cambria')
% CC.labelRotate('off')
% textHdl = findobj(gca,'Tag','ChordLabel');
% for i = 1:length(textHdl)
% if textHdl(i).Position(2) < 0
% if abs(textHdl(i).Position(1)) > .7
% textHdl(i).Rotation = textHdl(i).Rotation + 45;
% textHdl(i).HorizontalAlignment = 'right';
% if textHdl(i).Rotation > 90
% textHdl(i).Rotation = textHdl(i).Rotation + 180;
% textHdl(i).HorizontalAlignment = 'left';
% end
% else
% textHdl(i).Rotation = textHdl(i).Rotation + 10;
% textHdl(i).HorizontalAlignment = 'right';
% end
% end
% end
demo 2
rng(3)
dataMat = randi([1,15], [7,22]);
dataMat(dataMat < 11) = 0;
dataMat(1, sum(dataMat, 1) == 0) = 15;
colName = {'A2M', 'FGA', 'FGB', 'FGG', 'F11', 'KLKB1', 'SERPINE1', 'VWF',...
'THBD', 'TFPI', 'PLAT', 'SERPINA5', 'SERPIND1', 'F2', 'PLG', 'F12',...
'SERPINC1', 'SERPINA1', 'PROS1', 'SERPINF2', 'F13A1', 'PROC'};
rowName = {'Lung', 'Spleen', 'Liver', 'Heart',...
'Renal cortex', 'Renal medulla', 'Thyroid'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80, 'LRadius',1.21);
CC = CC.draw();
CC.labelRotate('on')
% 单独设置每一个弦末端方块(Set individual end blocks for each chord)
% Use obj.setEachSquareF_Prop
% or obj.setEachSquareT_Prop
% F means from (blocks below)
% T means to (blocks above)
CListT = [173,70,65; 79,135,136]./255;
% Upregulated:1 | Downregulated:2
Regulated = rand([7, 22]);
Regulated = (Regulated < .8) + 1;
for i = 1:size(Regulated, 1)
for j = 1:size(Regulated, 2)
CC.setEachSquareT_Prop(i, j, 'FaceColor', CListT(Regulated(i,j),:))
end
end
% 绘制图例(Draw legend)
H1 = fill([0,1,0] + 100, [1,0,1] + 100, CListT(1,:), 'EdgeColor','none');
H2 = fill([0,1,0] + 100, [1,0,1] + 100, CListT(2,:), 'EdgeColor','none');
lgdHdl = legend([H1,H2], {'Upregulated','Downregulated'}, 'AutoUpdate','off', 'Location','best');
lgdHdl.ItemTokenSize = [12,12];
lgdHdl.Box = 'off';
lgdHdl.FontSize = 13;
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [128,108,171; 222,208,161; 180,196,229; 209,150,146; 175,201,166;
134,156,118; 175,175,173]./255;
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListF(i,:), 'FaceAlpha',.45)
end
end
demo 3
dataMat = rand([15,15]);
dataMat(dataMat > .15) = 0;
CList = [ 75,146,241; 252,180, 65; 224, 64, 10; 5,100,146; 191,191,191;
26, 59,105; 255,227,130; 18,156,221; 202,107, 75; 0, 92,219;
243,210,136; 80, 99,129; 241,185,168; 224,131, 10; 120,147,190]./255;
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17, 'Color',[0,0,.8])
demo 4
rng(5)
dataMat = randi([1,20], [5,5]);
dataMat(1,1) = 110;
dataMat(2,2) = 40;
dataMat(3,3) = 50;
dataMat(5,5) = 50;
CList1 = [164,190,158; 216,213,153; 177,192,208; 238,238,227; 249,217,153]./255;
CList2 = [247,204,138; 128,187,185; 245,135,124; 140,199,197; 252,223,164]./255;
CList = CList2;
NameList={'CHORD','CHART','MADE','BY','SLANDARER'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList, 'Sep',1/30, 'Label',NameList, 'LRadius',1.33);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.7, 'EdgeColor',CList(i,:)./1.1)
end
end
end
% 修改方块颜色(Modify the color of the blocks)
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',CList(i,:)./1.7)
end
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17)
BCC.tickLabelState('on')
BCC.setTickFont('FontName','Cambria', 'FontSize',9)
demo 5
dataMat=randi([1,20], [14,3]);
dataMat(11:14,1) = 0;
dataMat(6:10,2) = 0;
dataMat(1:5,3) = 0;
colName = compose('C%d', 1:3);
rowName = [compose('A%d', 1:7), compose('B%d', 7:-1:1)];
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',[190,190,190]./255)
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF=[255,244,138; 253,220,117; 254,179, 78; 253,190, 61;
252, 78, 41; 228, 26, 26; 178, 0, 36; 4, 84,119;
1,113,137; 21,150,155; 67,176,173; 68,173,158;
123,204,163; 184,229,162]./255;
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListF(i,:), 'FaceAlpha',.5)
end
end
CC.tickState('on')
CC.tickLabelState('on')
demo 6
rng(2)
dataMat = randi([0,40], [20,4]);
dataMat(rand([20,4]) < .2) = 0;
dataMat(1,3) = 500;
dataMat(20,1:4) = [140; 150; 80; 90];
colName = compose('T%d', 1:4);
rowName = compose('SL%d', 1:20);
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80, 'LRadius',1.23);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT = [0.62,0.49,0.27; 0.28,0.57,0.76
0.25,0.53,0.30; 0.86,0.48,0.34];
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [0.94,0.84,0.60; 0.16,0.50,0.67; 0.92,0.62,0.49;
0.48,0.44,0.60; 0.48,0.44,0.60; 0.71,0.79,0.73;
0.96,0.98,0.98; 0.51,0.82,0.95; 0.98,0.70,0.82;
0.97,0.85,0.84; 0.55,0.64,0.62; 0.94,0.93,0.60;
0.98,0.90,0.85; 0.72,0.84,0.81; 0.85,0.45,0.49;
0.76,0.76,0.84; 0.59,0.64,0.62; 0.62,0.14,0.15;
0.75,0.75,0.75; 1.00,1.00,1.00];
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
CC.setSquareF_N(size(dataMat, 1), 'EdgeColor','k', 'LineWidth',1)
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListT(j,:), 'FaceAlpha',.46)
end
end
CC.tickState('on')
CC.labelRotate('on')
CC.setFont('FontSize',17, 'FontName','Cambria')
demo 7
dataMat = randi([10,10000], [10,10]);
dataMat(6:10,:) = 0;
dataMat(:,1:5) = 0;
NameList = {'BOC', 'ICBC', 'ABC', 'BOCM', 'CCB', ...
'yama', 'nikoto', 'saki', 'koto', 'kawa'};
CList = [0.63,0.75,0.88
0.67,0.84,0.75
0.85,0.78,0.88
1.00,0.92,0.93
0.92,0.63,0.64
0.57,0.67,0.75
1.00,0.65,0.44
0.72,0.73,0.40
0.65,0.57,0.58
0.92,0.94,0.96];
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList, 'Label',NameList);
BCC = BCC.draw();
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.85, 'EdgeColor',CList(i,:)./1.5, 'LineWidth',.8)
end
end
end
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',CList(i,:)./1.5, 'LineWidth',1)
end
% 添加刻度、修改字体
BCC.tickState('on')
BCC.setFont('FontName','Cambria', 'FontSize',17)
demo 8
dataMat = rand([11,4]);
dataMat = round(10.*dataMat.*((11:-1:1).'+1))./10;
colName = {'A','B','C','D'};
rowName = {'Acidobacteriota', 'Actinobacteriota', 'Proteobacteria', ...
'Chloroflexi', 'Bacteroidota', 'Firmicutes', 'Gemmatimonadota', ...
'Verrucomicrobiota', 'Patescibacteria', 'Planctomyetota', 'Others'};
figure('Units','normalized', 'Position',[.02,.05,.8,.85])
CC = chordChart(dataMat, 'colName',colName, 'Sep',1/80, 'SSqRatio',30/100);% -30/100
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT = [0.93,0.60,0.62
0.55,0.80,0.99
0.95,0.82,0.18
1.00,0.81,0.91];
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [0.75,0.73,0.86
0.56,0.83,0.78
0.00,0.60,0.20
1.00,0.49,0.02
0.78,0.77,0.95
0.59,0.24,0.36
0.98,0.51,0.45
0.96,0.55,0.75
0.47,0.71,0.84
0.65,0.35,0.16
0.40,0.00,0.64];
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
CListC = [0.55,0.83,0.76
0.75,0.73,0.86
0.00,0.60,0.19
1.00,0.51,0.04];
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListC(j,:), 'FaceAlpha',.4)
end
end
% 单独设置每一个弦末端方块(Set individual end blocks for each chord)
% Use obj.setEachSquareF_Prop
% or obj.setEachSquareT_Prop
% F means from (blocks below)
% T means to (blocks above)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setEachSquareT_Prop(i,j, 'FaceColor', CListF(i,:))
end
end
% 添加刻度
CC.tickState('on')
% 修改字体，字号及颜色
CC.setFont('FontName','Cambria', 'FontSize',17)
% 隐藏下方标签
textHdl = findobj(gca, 'Tag','ChordLabel');
for i = 1:length(textHdl)
if textHdl(i).Position(2) < 0
set(textHdl(i), 'Visible','off')
end
end
% 绘制图例(Draw legend)
scatterHdl = scatter(10.*ones(size(dataMat,1)),10.*ones(size(dataMat,1)), ...
55, 'filled');
for i = 1:length(scatterHdl)
scatterHdl(i).CData = CListF(i,:);
end
lgdHdl = legend(scatterHdl, rowName, 'Location','best', 'FontSize',16, 'FontName','Cambria', 'Box','off');
set(lgdHdl, 'Position',[.7482,.3577,.1658,.3254])
demo 9
dataMat = randi([0,10], [5,5]);
CList1 = [0.70,0.59,0.67
0.62,0.70,0.62
0.81,0.75,0.62
0.80,0.62,0.56
0.62,0.65,0.65];
CList2 = [0.02,0.02,0.02
0.59,0.26,0.33
0.38,0.49,0.38
0.03,0.05,0.03
0.29,0.28,0.32];
CList = CList2;
NameList={'CHORD','CHART','MADE','BY','SLANDARER'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList, 'Sep',1/30, 'Label',NameList, 'LRadius',1.33);
BCC = BCC.draw();
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
BCC.setChordMN(i,j, 'FaceAlpha',.5)
end
end
% 修改方块颜色(Modify the color of the blocks)
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',[0,0,0], 'LineWidth',5)
end
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontSize',17, 'FontWeight','bold')
BCC.tickLabelState('on')
BCC.setTickFont('FontSize',9)
demo 10
rng(2)
dataMat = rand([14,5]) > .3;
colName = {'phosphorylation', 'vasculature development', 'blood vessel development', ...
'cell adhesion', 'plasma membrane'};
rowName = {'THY1', 'FGF2', 'MAP2K1', 'CDH2', 'HBEGF', 'CXCR4', 'ECSCR',...
'ACVRL1', 'RECK', 'PNPLA6', 'CDH5', 'AMOT', 'EFNB2', 'CAV1'};
figure('Units','normalized', 'Position',[.02,.05,.9,.85])
CC = chordChart(dataMat, 'colName',colName, 'rowName',rowName, 'Sep',1/80, 'LRadius',1.2);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT1 = [0.5686 0.1961 0.2275
0.2275 0.2863 0.3765
0.8431 0.7882 0.4118
0.4275 0.4510 0.2706
0.3333 0.2706 0.2510];
CListT2 = [0.4941 0.5490 0.4118
0.9059 0.6510 0.3333
0.8980 0.6157 0.4980
0.8902 0.5137 0.4667
0.4275 0.2824 0.2784];
CListT3 = [0.4745 0.5843 0.7569
0.4824 0.5490 0.5843
0.6549 0.7216 0.6510
0.9412 0.9216 0.9059
0.9804 0.7608 0.6863];
CListT = CListT3;
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:), 'EdgeColor',[0,0,0])
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListT(j,:), 'FaceAlpha',.9, 'EdgeColor',[0,0,0])
end
end
% 修改下方方块颜色(Modify the color of the blocks below)
logFC = sort(rand(1,14))*6 - 3;
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'CData',logFC(i), 'FaceColor','flat', 'EdgeColor',[0,0,0])
end
CMap = [ 0 0 1.0000; 0.0645 0.0645 1.0000; 0.1290 0.1290 1.0000; 0.1935 0.1935 1.0000
0.2581 0.2581 1.0000; 0.3226 0.3226 1.0000; 0.3871 0.3871 1.0000; 0.4516 0.4516 1.0000
0.5161 0.5161 1.0000; 0.5806 0.5806 1.0000; 0.6452 0.6452 1.0000; 0.7097 0.7097 1.0000
0.7742 0.7742 1.0000; 0.8387 0.8387 1.0000; 0.9032 0.9032 1.0000; 0.9677 0.9677 1.0000
1.0000 0.9677 0.9677; 1.0000 0.9032 0.9032; 1.0000 0.8387 0.8387; 1.0000 0.7742 0.7742
1.0000 0.7097 0.7097; 1.0000 0.6452 0.6452; 1.0000 0.5806 0.5806; 1.0000 0.5161 0.5161
1.0000 0.4516 0.4516; 1.0000 0.3871 0.3871; 1.0000 0.3226 0.3226; 1.0000 0.2581 0.2581
1.0000 0.1935 0.1935; 1.0000 0.1290 0.1290; 1.0000 0.0645 0.0645; 1.0000 0 0];
colormap(CMap);
try clim([-3,3]),catch,end
try caxis([-3,3]),catch,end
CBHdl = colorbar();
CBHdl.Position = [0.74,0.25,0.02,0.2];
% =========================================================================
% 交换XY轴(Swap XY axis)
patchHdl = findobj(gca, 'Type','patch');
for i = 1:length(patchHdl)
tX = patchHdl(i).XData;
tY = patchHdl(i).YData;
patchHdl(i).XData = tY;
patchHdl(i).YData = - tX;
end
txtHdl = findobj(gca, 'Type','text');
for i = 1:length(txtHdl)
txtHdl(i).Position([1,2]) = [1,-1].*txtHdl(i).Position([2,1]);
if txtHdl(i).Position(1) < 0
txtHdl(i).HorizontalAlignment = 'right';
else
txtHdl(i).HorizontalAlignment = 'left';
end
end
lineHdl = findobj(gca, 'Type','line');
for i = 1:length(lineHdl)
tX = lineHdl(i).XData;
tY = lineHdl(i).YData;
lineHdl(i).XData = tY;
lineHdl(i).YData = - tX;
end
% =========================================================================
txtHdl = findobj(gca, 'Type','text');
for i = 1:length(txtHdl)
if txtHdl(i).Position(1) > 0
txtHdl(i).Visible = 'off';
end
end
text(1.25,-.15, 'LogFC', 'FontSize',16)
text(1.25,1, 'Terms', 'FontSize',16)
patchHdl = [];
for i = 1:size(dataMat, 2)
patchHdl(i) = fill([10,11,12],[10,13,13], CListT(i,:), 'EdgeColor',[0,0,0]);
end
lgdHdl = legend(patchHdl, colName, 'Location','best', 'FontSize',14, 'FontName','Cambria', 'Box','off');
lgdHdl.Position = [.735,.53,.167,.27];
lgdHdl.ItemTokenSize = [18,8];
demo 11
rng(2)
dataMat = rand([12,12]);
dataMat(dataMat < .85) = 0;
dataMat(7,:) = 1.*(rand(1,12)+.1);
dataMat(11,:) = .6.*(rand(1,12)+.1);
dataMat(12,:) = [2.*(rand(1,10)+.1), 0, 0];
CList = [repmat([49,49,49],[10,1]); 235,28,34; 19,146,241]./255;
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','off', 'CData',CList);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17)
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.78, 'EdgeColor',[0,0,0])
end
end
end
% 修改方块颜色(Modify the color of the blocks)
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',[0,0,0], 'LineWidth',2)
end
demo 12
dataMat = rand([9,9]);
dataMat(dataMat > .7) = 0;
dataMat(eye(9) == 1) = (rand([1,9])+.2).*3;
CList = [0.85,0.23,0.24
0.96,0.39,0.18
0.98,0.63,0.22
0.99,0.80,0.26
0.70,0.76,0.21
0.24,0.74,0.71
0.27,0.65,0.84
0.09,0.37,0.80
0.64,0.40,0.84];
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
% 添加刻度、刻度标签
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17)
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.7)
end
end
end
demo 13
rng(2)
dataMat = randi([1,40], [7,4]);
dataMat(rand([7,4]) < .1) = 0;
colName = compose('MATLAB%d', 1:4);
rowName = compose('SL%d', 1:7);
figure('Units','normalized', 'Position',[.02,.05,.7,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80, 'LRadius',1.32);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT = [0.49,0.64,0.53
0.75,0.39,0.35
0.80,0.74,0.42
0.40,0.55,0.66];
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [0.91,0.91,0.97
0.62,0.95,0.66
0.91,0.61,0.20
0.54,0.45,0.82
0.99,0.76,0.81
0.91,0.85,0.83
0.53,0.42,0.43];
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListT(j,:), 'FaceAlpha',.46)
end
end
CC.tickState('on')
CC.tickLabelState('on')
CC.setFont('FontSize',17, 'FontName','Cambria')
CC.setTickFont('FontSize',8, 'FontName','Cambria')
% 绘制图例(Draw legend)
scatterHdl = scatter(10.*ones(size(dataMat,1)),10.*ones(size(dataMat,1)), ...
55, 'filled');
for i = 1:length(scatterHdl)
scatterHdl(i).CData = CListF(i,:);
end
lgdHdl = legend(scatterHdl, rowName, 'Location','best', 'FontSize',16, 'FontName','Cambria', 'Box','off');
set(lgdHdl, 'Position',[.77,.38,.1658,.27])
demo 14
rng(6)
dataMat = randi([1,20], [8,8]);
dataMat(dataMat > 5) = 0;
dataMat(1,:) = randi([1,15], [1,8]);
dataMat(1,8) = 40;
dataMat(8,8) = 60;
dataMat = dataMat./sum(sum(dataMat));
CList = [0.33,0.53,0.86
0.94,0.50,0.42
0.92,0.58,0.30
0.59,0.47,0.45
0.37,0.76,0.82
0.82,0.68,0.29
0.75,0.62,0.87
0.43,0.69,0.57];
NameList={'CHORD', 'CHART', 'AND', 'BICHORD',...
'CHART', 'MADE', 'BY', 'SLANDARER'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList, 'Sep',1/12, 'Label',NameList, 'LRadius',1.33);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.7, 'EdgeColor',CList(i,:)./1.1)
end
end
end
% 修改方块颜色(Modify the color of the blocks)
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',CList(i,:)./1.7)
end
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17)
BCC.tickLabelState('on')
BCC.setTickFont('FontName','Cambria', 'FontSize',9)
% 调整数值字符串格式
% Adjust numeric string format
BCC.setTickLabelFormat(@(x)[num2str(round(x*100)),'%'])
demo 15
CList = [0.81,0.72,0.83
0.69,0.82,0.89
0.17,0.44,0.64
0.70,0.85,0.55
0.03,0.57,0.13
0.97,0.67,0.64
0.84,0.09,0.12
1.00,0.80,0.46
0.98,0.52,0.01
];
figure('Units','normalized', 'Position',[.02,.05,.53,.85], 'Color',[1,1,1])
% =========================================================================
ax1 = axes('Parent',gcf, 'Position',[0,1/2,1/2,1/2]);
dataMat = rand([9,9]);
dataMat(dataMat > .4) = 0;
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
BCC.tickState('on')
BCC.setFont('Visible','off')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.6)
end
end
end
text(-1.2,1.2, 'a', 'FontName','Times New Roman', 'FontSize',35)
% =========================================================================
ax2 = axes('Parent',gcf, 'Position',[1/2,1/2,1/2,1/2]);
dataMat = rand([9,9]);
dataMat(dataMat > .4) = 0;
dataMat = dataMat.*(1:9);
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
BCC.tickState('on')
BCC.setFont('Visible','off')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.6)
end
end
end
text(-1.2,1.2, 'b', 'FontName','Times New Roman', 'FontSize',35)
% =========================================================================
ax3 = axes('Parent',gcf, 'Position',[0,0,1/2,1/2]);
dataMat = rand([9,9]);
dataMat(dataMat > .4) = 0;
dataMat = dataMat.*(1:9).';
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
BCC.tickState('on')
BCC.setFont('Visible','off')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.6)
end
end
end
text(-1.2,1.2, 'c', 'FontName','Times New Roman', 'FontSize',35)
% =========================================================================
ax4 = axes('Parent',gcf, 'Position',[1/2,0,1/2,1/2]);
ax4.XColor = 'none'; ax4.YColor = 'none';
ax4.XLim = [-1,1]; ax4.YLim = [-1,1];
hold on
NameList = {'Food supply', 'Biodiversity', 'Water quality regulation', ...
'Air quality regulation', 'Erosion control', 'Carbon storage', ...
'Water retention', 'Recreation', 'Soil quality regulation'};
patchHdl = [];
for i = 1:size(dataMat, 2)
patchHdl(i) = fill([10,11,12],[10,13,13], CList(i,:), 'EdgeColor',[0,0,0]);
end
lgdHdl = legend(patchHdl, NameList, 'Location','best', 'FontSize',14, 'FontName','Cambria', 'Box','off');
lgdHdl.Position = [.625,.11,.255,.27];
lgdHdl.ItemTokenSize = [18,8];
demo 16
dataMat = rand([15,15]);
dataMat(dataMat > .2) = 0;
CList = [ 75,146,241; 252,180, 65; 224, 64, 10; 5,100,146; 191,191,191;
26, 59,105; 255,227,130; 18,156,221; 202,107, 75; 0, 92,219;
243,210,136; 80, 99,129; 241,185,168; 224,131, 10; 120,147,190]./255;
CListC = [54,69,92]./255;
CList = CList.*.6 + CListC.*.4;
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17, 'Color',[0,0,0])
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceColor',CListC ,'FaceAlpha',.07)
end
end
end
[~, N] = max(sum(dataMat > 0, 2));
for j = 1:size(dataMat, 2)
BCC.setChordMN(N,j, 'FaceColor',CList(N,:) ,'FaceAlpha',.6)
end
You need to download following tools:
The line integral , where C is the boundary of the square oriented counterclockwise, can be evaluated in two ways:
Using the definition of the line integral:
% Initialize the integral sum
integral_sum = 0;
% Segment C1: x = -1, y goes from -1 to 1
y = linspace(-1, 1);
x = -1 * ones(size(y));
dy = diff(y);
integral_sum = integral_sum + sum(-x(1:end-1) .* dy);
% Segment C2: y = 1, x goes from -1 to 1
x = linspace(-1, 1);
y = ones(size(x));
dx = diff(x);
integral_sum = integral_sum + sum(y(1:end-1).^2 .* dx);
% Segment C3: x = 1, y goes from 1 to -1
y = linspace(1, -1);
x = ones(size(y));
dy = diff(y);
integral_sum = integral_sum + sum(-x(1:end-1) .* dy);
% Segment C4: y = -1, x goes from 1 to -1
x = linspace(1, -1);
y = -1 * ones(size(x));
dx = diff(x);
integral_sum = integral_sum + sum(y(1:end-1).^2 .* dx);
disp(['Direct Method Integral: ', num2str(integral_sum)]);
Plotting the square path
% Define the square's vertices
vertices = [-1 -1; -1 1; 1 1; 1 -1; -1 -1];
% Plot the square
figure;
plot(vertices(:,1), vertices(:,2), '-o');
title('Square Path for Line Integral');
xlabel('x');
ylabel('y');
grid on;
axis equal;
% Add arrows to indicate the path direction (counterclockwise)
hold on;
for i = 1:size(vertices,1)-1
% Calculate direction
dx = vertices(i+1,1) - vertices(i,1);
dy = vertices(i+1,2) - vertices(i,2);
% Reduce the length of the arrow for better visibility
scale = 0.2;
dx = scale * dx;
dy = scale * dy;
% Calculate the start point of the arrow
startx = vertices(i,1) + (1 - scale) * dx;
starty = vertices(i,2) + (1 - scale) * dy;
% Plot the arrow
quiver(startx, starty, dx, dy, 'MaxHeadSize', 0.5, 'Color', 'r', 'AutoScale', 'off');
end
hold off;
Apply Green's Theorem for the line integral
% Define the partial derivatives of P and Q
f = @(x, y) -1 - 2*y; % derivative of -x with respect to x is -1, and derivative of y^2 with respect to y is 2y
% Compute the double integral over the square [-1,1]x[-1,1]
integral_value = integral2(f, -1, 1, 1, -1);
disp(['Green''s Theorem Integral: ', num2str(integral_value)]);
Plotting the vector field related to Green’s theorem
% Define the grid for the vector field
[x, y] = meshgrid(linspace(-2, 2, 20), linspace(-2 ,2, 20));
% Define the vector field components
P = y.^2; % y^2 component
Q = -x; % -x component
% Plot the vector field
figure;
quiver(x, y, P, Q, 'b');
hold on; % Hold on to plot the square on the same figure
% Define the square's vertices
vertices = [-1 -1; -1 1; 1 1; 1 -1; -1 -1];
% Plot the square path
plot(vertices(:,1), vertices(:,2), '-o', 'Color', 'k'); % 'k' for black color
title('Vector Field (P = y^2, Q = -x) with Square Path');
xlabel('x');
ylabel('y');
axis equal;
% Add arrows to indicate the path direction (counterclockwise)
for i = 1:size(vertices,1)-1
% Calculate direction
dx = vertices(i+1,1) - vertices(i,1);
dy = vertices(i+1,2) - vertices(i,2);
% Reduce the length of the arrow for better visibility
scale = 0.2;
dx = scale * dx;
dy = scale * dy;
% Calculate the start point of the arrow
startx = vertices(i,1) + (1 - scale) * dx;
starty = vertices(i,2) + (1 - scale) * dy;
% Plot the arrow
quiver(startx, starty, dx, dy, 'MaxHeadSize', 0.5, 'Color', 'r', 'AutoScale', 'off');
end
hold off;
To solve a surface integral for example the over the sphere easily in MATLAB, you can leverage the symbolic toolbox for a direct and clear solution. Here is a tip to simplify the process:
  1. Use Symbolic Variables and Functions: Define your variables symbolically, including the parameters of your spherical coordinates θ and ϕ and the radius r . This allows MATLAB to handle the expressions symbolically, making it easier to manipulate and integrate them.
  2. Express in Spherical Coordinates Directly: Since you already know the sphere's equation and the relationship in spherical coordinates, define x, y, and z in terms of r , θ and ϕ directly.
  3. Perform Symbolic Integration: Use MATLAB's `int` function to integrate symbolically. Since the sphere and the function are symmetric, you can exploit these symmetries to simplify the calculation.
Here’s how you can apply this tip in MATLAB code:
% Include the symbolic math toolbox
syms theta phi
% Define the limits for theta and phi
theta_limits = [0, pi];
phi_limits = [0, 2*pi];
% Define the integrand function symbolically
integrand = 16 * sin(theta)^3 * cos(phi)^2;
% Perform the symbolic integral for the surface integral
surface_integral = int(int(integrand, theta, theta_limits(1), theta_limits(2)), phi, phi_limits(1), phi_limits(2));
% Display the result of the surface integral symbolically
disp(['The surface integral of x^2 over the sphere is ', char(surface_integral)]);
% Number of points for plotting
num_points = 100;
% Define theta and phi for the sphere's surface
[theta_mesh, phi_mesh] = meshgrid(linspace(double(theta_limits(1)), double(theta_limits(2)), num_points), ...
linspace(double(phi_limits(1)), double(phi_limits(2)), num_points));
% Spherical to Cartesian conversion for plotting
r = 2; % radius of the sphere
x = r * sin(theta_mesh) .* cos(phi_mesh);
y = r * sin(theta_mesh) .* sin(phi_mesh);
z = r * cos(theta_mesh);
% Plot the sphere
figure;
surf(x, y, z, 'FaceColor', 'interp', 'EdgeColor', 'none');
colormap('jet'); % Color scheme
shading interp; % Smooth shading
camlight headlight; % Add headlight-type lighting
lighting gouraud; % Use Gouraud shading for smooth color transitions
title('Sphere: x^2 + y^2 + z^2 = 4');
xlabel('x-axis');
ylabel('y-axis');
zlabel('z-axis');
colorbar; % Add color bar to indicate height values
axis square; % Maintain aspect ratio to be square
view([-30, 20]); % Set a nice viewing angle
Hans Scharler
Hans Scharler
Last activity 2024-4-19

Starter MATLAB Script

I am often talking to new MATLAB users. I have put together one script. If you know how this script works, why, and what each line means, you will be well on your way on your MATLAB learning journey.
% Clear existing variables and close figures
clear;
close all;
% Print to the Command Window
disp('Hello, welcome to MATLAB!');
% Create a simple vector and matrix
vector = [1, 2, 3, 4, 5];
matrix = [1, 2, 3; 4, 5, 6; 7, 8, 9];
% Display the created vector and matrix
disp('Created vector:');
disp(vector);
disp('Created matrix:');
disp(matrix);
% Perform element-wise multiplication
result = vector .* 2;
% Display the result of the operation
disp('Result of element-wise multiplication of the vector by 2:');
disp(result);
% Create plot
x = 0:0.1:2*pi; % Generate values from 0 to 2*pi
y = sin(x); % Calculate the sine of these values
% Plotting
figure; % Create a new figure window
plot(x, y); % Plot x vs. y
title('Simple Plot of sin(x)'); % Give the plot a title
xlabel('x'); % Label the x-axis
ylabel('sin(x)'); % Label the y-axis
grid on; % Turn on the grid
disp('This is the end of the script. Explore MATLAB further to learn more!');
In one line of MATLAB code, compute how far you can see at the seashore. In otherwords, how far away is the horizon from your eyes? You can assume you know your height and the diameter or radius of the earth.