Skeleton Length and Aspect Ratio Calculator for Mitochondria

版本 1.0.1 (3.3 KB) 作者: Xueying Wang
This function is used to generate skeletons of mitochondria, and calculate the length of the said skeletons.
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更新时间 2021/11/17

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Before using this function in matlab, you would need to obtian the mito_meta file from vast and python, and the h5 file of all mitochondira. The methods of obtaining which are posted in the Project Website(after the website is made).
This function use the mito_meta and the h5 to generate skeletons of mitochondria, and calculate the length of the said skeletons. This function also generate 3 aspect ratios for each mitochondria.
The final product of this function would be 1 csv files, containing 5 columns: gray value, xy aspect ratio, yz aspect ratio, xz aspect ratio, and skeleton length.
To use this function in matlab, also install findND https://www.mathworks.com/matlabcentral/fileexchange/64383-findnd?s_tid=srchtitle and skeleton3D https://www.mathworks.com/matlabcentral/fileexchange/43400-skeleton3d as matlab apps.

引用格式

Xueying Wang (2025). Skeleton Length and Aspect Ratio Calculator for Mitochondria (https://www.mathworks.com/matlabcentral/fileexchange/101579-skeleton-length-and-aspect-ratio-calculator-for-mitochondria), MATLAB Central File Exchange. 检索时间: .

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创建方式 R2021b
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参考作品: Skeleton3D

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版本 已发布 发行说明
1.0.1

This code is primarily developed by YuTian (Tim) Fan, who interned with me in Fall 2021.
1.0.0