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Automated phenotyping of mouse behavior

version (734 KB) by Tapan
Automated analysis of common behavior tasks used by the neuroscience community


Updated 23 Nov 2014

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This work includes automated routines for the analysis of several commonly used behavior tasks used by the neuroscience community. We automated the scoring of: Barnes Maze, Social interaction, spatial object recognition, fear conditioning, zero maze, y-maze, open field, and morris water maze.
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Cite As

Tapan (2020). Automated phenotyping of mouse behavior (, MATLAB Central File Exchange. Retrieved .

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Fixed bugs relating to the duration of video processing.

MATLAB Release Compatibility
Created with R2013a
Compatible with any release
Platform Compatibility
Windows macOS Linux

autotyping14.11 copy/

autotyping14.11 copy/BarnesMaze/

autotyping14.11 copy/FearConditioning/

autotyping14.11 copy/Inpaint_nans/

autotyping14.11 copy/Inpaint_nans/demo/

autotyping14.11 copy/Inpaint_nans/doc/

autotyping14.11 copy/Inpaint_nans/test/

autotyping14.11 copy/MWM/

autotyping14.11 copy/OF/

autotyping14.11 copy/SOR/

autotyping14.11 copy/SOR3/

autotyping14.11 copy/Social/

autotyping14.11 copy/YMaze/

autotyping14.11 copy/ZeroMaze/