A simple BLAST algorithm

版本 1.3 (9.5 KB) 作者: Ligong Han
A simple BLAST algorithm based on a simple dynamic programming strategy.
0.0
(0)
486.0 次下载
更新时间 2015/3/10

查看许可证

The function implements a BLAST (Basic Local Alignment Search Tool) algorithm using a simple dynamic programming strategy. A self-defined vTree class is also included, on which the "Reconstruct" process is based. The data of the tree is stored in a vector. The idea is inspired by the union-find algorithm.

引用格式

Ligong Han (2024). A simple BLAST algorithm (https://www.mathworks.com/matlabcentral/fileexchange/49003-a-simple-blast-algorithm), MATLAB Central File Exchange. 检索来源 .

MATLAB 版本兼容性
创建方式 R2014a
兼容任何版本
平台兼容性
Windows macOS Linux
类别
在 Help Center 和 MATLAB Answers 中查找有关 Genomics and Next Generation Sequencing 的更多信息

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

myblast/

myblast/@vTree/

版本 已发布 发行说明
1.3

- vTree class updated: fixed an error of the 'delChild' method
1.2.0.0

- Updated vTree
1.1.0.0

- a missing file added
- method of vTree class added
1.0.0.0