i6mA-DNCP

版本 1.0.2 (34.7 KB) 作者: Liang Kong
a computational tool for identifying 6mA sites in rice genome
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更新时间 2019/8/30

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train_positive.txt train_negotive.txt: positive and negative samples of benchmark dataset
DNA properties.xlsx: 15 DNA properties including 12 physical properties and 3 thermodynamic properties
DNCPextraction.m (function): encoding DNA sequences with dinucleotide composition and dinucleotide-based DNA properties
datascale.m (function): scaling DNA features
cvtreebagging.m (function): evaluating prediction model with cross-validation
performance_metrics.m (function): calculating various performance metrics
demo.m: demonstrate how to test i6mA-DNCP with cross-validation method to reproduce the results in the paper
i6mADNCP.m (function): building i6mA-DNCP to identify whether a DNA sequence is 6mA site
demo2.m: demonstrate how to use function "i6mADNCP" to identify the DNA 6mA site from a DNA sequence

引用格式

Liang Kong (2024). i6mA-DNCP (https://www.mathworks.com/matlabcentral/fileexchange/72549-i6ma-dncp), MATLAB Central File Exchange. 检索来源 .

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版本 已发布 发行说明
1.0.2

update the function i6mADNCP
1.0.1

update the function i6mADNCP
1.0.0