Neural Network Toolbox: "out of memory" error

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Hello,
I am using the Neural Network Toolbox for creating forecasting models.
I have not faced any problems when dealing with matrixes of 10x3500 size until recently when I tried to create a "while" loop. I use such matrixes as training data.
I got an "out of memory error" and every time I am trying to enter the same matrix (the 10x3500) I get the memory error.
After that memory error created from the loop command I cannot anymore train a NN with the specific matrix.
Using a different pc I deal succesively with this matrix with no Matlab memory errors.
I use Matlab2012b on a 64-bit system with 8GB RAM.
On the other system I use Matlab2011a (32-bit and 4GB).
Any help?
Thank you very much.
Pavlos

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