Loading file from my directory?
1 次查看(过去 30 天)
显示 更早的评论
Dear I would like to download imagej-nii and also ROI (from imageJ software) and calculate the mean and std of the voxels within adjacent 5 slices (3D volume) for 6 animals. I have created code but many errors I have,,,, cause I am so beginner to use matlab.
I do not know what is the ROI format, because it is appear as text. When I search on the ImageJ website, there is no specific format for the ROI.
% for multi animal calculation.
Sabjects={'animal1', 'animal2', 'animal3','animal4', 'animal5,'animal6'};
for i =1: size(subjects,2);
image = load - nii(['\MRI\..\'subjects(i)'\roi.nii']);
for j = 0:1
region = voxel (mod = = i);
deviation (j,i+1)= std (region,[],3);
end
end
%%this is for one animal
image = load-nii ("name of the file");
roi = load-nii ("name of the file");
view-nii (roi); view-nii (image);
region1= voxels ((mod (roi ,2) == 1).* (roi > 0));
region2= voxels ((mod (roi ,2) == 0).* (roi > 0));
deviation = std (region ,[] ,3);
3 个评论
回答(0 个)
另请参阅
类别
在 Help Center 和 File Exchange 中查找有关 Read, Write, and Modify Image 的更多信息
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!