Load files to ngsbrowser from command line

2011 9 9
1 个回答
5 次查看（30 天）

0 个投票

I am looking for a way to load files (both reference fasta and sam) into the ngsbrowser from the command line - ie without clicking file load or file add data. Does anyone know of a solution? Or does anyone know how to code mouse clicks/keystrokes so that a script (I am writing a GUI using GUIDE) could 'do' the clicking for the user?
Thank!

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回答（1 个）

Lucio Cetto
Lucio Cetto 2011-10-18

1 个投票

This is undocummented, unfortunately it is only possible for short read data:
bm1 = BioMap('mysamfile.sam')
bm2 = BioMap('mybamfile.bam')
ngsbrowser
ngsbrowser(bm1)
ngsbrowser(bm2)

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Micah
Micah
2011-9-9

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