Unfortunately, aoctool does not have an inherent option to disable the pop-up window while still displaying the results within the live script output panel. The 'Display' option, as you mentioned, turns off all displays, including the ANOVA table output.
As a workaround, you can consider using the lower-level functions that aoctool uses internally to perform the ANCOVA without the GUI. These functions can provide the statistical output without the interactive components. The anovan function is one such option that can perform ANCOVA analysis and return similar statistical outputs.
Here's an example of how you might use anovan to get the ANCOVA results without the pop-up window:
% Assuming 'age' is your covariate, 'sample' is your response variable,
% and 'group' is your factor (grouping variable).
% Perform ANCOVA using anovan
[p,atab,stats] = anovan(sample, {group, age}, 'continuous', 2, 'varnames', {'Group','Age'});
% Display the ANOVA table in the command window or live script output
disp(atab);
% If you want to generate the figure yourself, you can use the stats output
% to create plots manually. For example, to create a basic interaction plot:
interactionplot(sample, {group, age}, 'varnames', {'Group','Age'});
This code will perform the ANCOVA and display the ANOVA table without generating the interactive GUI. You can also generate plots manually using the statistical information returned in stats.
Remember to adjust the inputs to anovan according to your specific needs, such as specifying model types or other options.
While this does not replicate the exact behavior of aoctool within a live script, it provides a non-interactive alternative that may be suitable for your needs when working with scripts and live scripts.
