Converting MATLAB Isosurface into Triangulation object for .stl export
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I am trying to build a code which can take a .tiff file with volumetric data, get a 3-D mesh representation and export that as a .stl geometry for use in COMSOL multiphysics.
I have gotten to the point where I have the face and vertices data from the isosurface function, and want to create a triangulation object(?) for use in stlwrite to export this format. However, when I try to use the face and vertices data, I get the error:
"
Error using indexing
The input must contain index values; entries with Inf, NaN, zero, negative, or fractional parts are not permitted.
Error in testing_dxl_file_conversion (line 62)
triangulationObj = triangulation(faces, vertices);
"
Code attached! It starts with a script to generate a test .tiff file composed of spheres within a volume (originally thought .dxf file conversion was possible, hence the name of the file).
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Fabio Freschi
2023-10-18
When running your file, the following error appears
Unrecognized function or variable 'numFrames'.
Error in testing_dxl_file_conversion (line 44)
tiffStack = zeros(tiffInfo(1).Width, tiffInfo(1).Height, numFrames, 'uint16'); % Use the appropriate data type
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Fabio Freschi
2023-10-18
编辑:Fabio Freschi
2023-10-18
You don't need to use surf2patch. You can extract infos directly from the struct created by isosurface
isosurf = isosurface(tiffStack, isovalue);
faces = isosurf.faces;
vertices = isosurf.vertices;
In addition, the call to stlwrite is wrong: the triangulation goes first
stlwrite(triangulationObj,stlFileName);
Beacuase I don't have all info to run your code, I show you a simple example
clear all, close all
[x,y,z] = meshgrid(-3:0.25:3);
V = x.*exp(-x.^2 -y.^2 -z.^2);
p = isosurface(x,y,z,V,1e-4);
% create triangulation
TR = triangulation(p.faces,p.vertices);
% save STL
stlwrite(TR,'mytest.stl');
% check: read STL
TR2 = stlread('mytest.stl');
% plot
figure
triplot(TR2);
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Saurav
2024-4-3
@Joshua Prince I have .tiff stack file now I want to create .stl file for the geomtery analysis of stone.
I have attached .tiff folder.
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