Using simFunction Object in Simbiology when my stoichiometry depends on a model parameter
显示 更早的评论
Hi,
Prevusly asked this question and my problem was solved. Now I have another question:
I am working on a SimBiology code with Stochiometry depending on a parameter (DAR). The specise are calculated based on their concentrations (nmol/liter). The size of the component changes too which is based on repeated rules. I use SimFunction for paarmetrization, therefor as we discussed, I use rate rules for the specieses in which their concentration depends on DAR. The method was explained before in this thread. But I get the follwoing error. Is their any way to fix this error?
Rate rule for species 'PL_ext' is invalid. Species 'PL_ext' is in concentration and in a compartment with varying capacity. For this to be valid, the compartment capacity
must be varied by a rate rule.
采纳的回答
Arthur Goldsipe
2024-3-21
0 个投票
The error you report is intended to communicate that SimBiology does not allow the following the following combination of conditions:
- A species is in concentration.
- The concentration of that species is determined by a rate rule.
- The compartment (that the species is in) is determined by a repeated assignment rule or an algebraic rule.
One fix would be the one mentioned at the end of the error message: Replace the repeated assignment rule or algebraic rule with a rate rule that gives equivalent behavior.
Another option would be to change the species units to amount instead of concentration and use (species amount)/(compartment volume) anywhere you need to reference the concentration.
更多回答（0 个）
类别
在 帮助中心 和 File Exchange 中查找有关 Build Models 的更多信息
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!
Translated by 
