This question has been asked many times with zero answers that I could find. Here's a hacky partial work around for 2D plots where a single axis fills the full figure window. It will add a line from the bottom-left corner to the top-right so when MATLAB crops the figure (without asking) it will have no choice but to leave the everything alone.
% add a white line from corner to corner
hold on;plt(reshape(axis,[],2),'-w');hold off;
% put it in the back
set(gca,'Children',circshift(get(gca, 'Children'),-1));
% print to .eps file
print('foo.eps','-depsc');
Assumes background is white and manipulates the current axis and figure. Would be great to see MATLAB address this problem (or point out an existing solution).
