The initial conditions on the integrators need to be set to appropriate values to yield the expected result.
Define the yellow curve
The blue curve is the antiderivative of the yellow curve with some constant of integration to be determined
b(t) = int(y(t),t) + C1
b(t) = 
Same for the red with respect to blue
r(t) = int(b(t),t) + C2
r(t) = 
Now solve for the Ci based on the initial conditions for r(t) and b(t), which are both zero based on the scope plots
sol = solve([b(0)==0,r(0)==0],[C1,C2])
Sub back to get the final results for b(t) and r(t)
b(t) = subs(b(t),sol)
b(t) = 
r(t) = subs(r(t),sol)
r(t) = 
which looke like they match the plots in the scope.