Steven is right with respect to the link he is refering to. After the loading of your simfunction in your file TEST, you need the line
%#function SimBiology.function.SimFunction
In order to compile your code you need the following kind of code:
load mysimfunction;
accelerate(mySimFunction) %to accelerate the simulation of the simfunction
save('new_simfunction','mySimFunction') %save the accelerated simfunction
out=mySimFunction.DependentFiles;
mccCommand = ['mcc -m TEST.m -N -p simbio -a new_simfunction.mat -a lacI_Repression.mat' ...
sprintf(' -a %s', out{:})]; %mention the use of the two mat files so that they are compiled into TEST.exe.
% The mex file of the accelerated version of the
% SimFunction needs to be included (out{:})
eval(mccCommand)
Note that it uses the accelerated SimFunction. Hence you need to load new_simfunction in TEST.m. The complete script TEST.m looks like as follows:
%%Generate simFunction Object
% The Model was exported from Matlab SimBiology by the export to workspace
% function. Afterwards it was saved as a .mat file.
%load('lacI_Repression.mat')
%mySimFunction = createSimFunction(Model,{'unnamed.DNA','unnamed.lacI'},{'unnamed.DNA_lacI'},[],'UseParallel',false);
%%Load simFunction
% loads the previouse generated simFunction (saved as a workspace .mat)
load new_simfunction;
%#function SimBiology.function.SimFunction
% needed to load the class SimFunction
%%Generate Input
% arbitrary inputs
Input = [100,500];
%%Evaluate SimFunction
stopTime = 100; % stoptime for the model
[~,y] = mySimFunction(Input,[],[],stopTime); % simFunction evaluation
myResult = vertcat(y{:}) % extracting the results from the cell array
%%END
I hope this helps.
Ingrid
