Active Contour algorithm applicated to Digital Elevation Model

Hello, I am using Chenyang Xu and Jerry Prince active contour algorithm in order to obtain the geometry of bomb craters from a digital elevation model. I have extracted central points of each crater (circular structures - see image) and I want to draw the contour line of those craters from the central points.
I try to use this code (see below) but I want to draw the contour line from coordinates of my central points (Not from clicked coordinates. I already have extracted the coordinates of the central points). How can I do that?
Thanks
% My image is called "svf.pgm"
imwrite(svf,'../images/svf.pgm');
[I,map] = rawread('../images/svf.pgm');
I=imresize(I,1);
disp(' Compute edge map ...');
f = 1 - I/255;
f0 = gaussianBlur(f,1);
[px,py] = gradient(f0);
figure(1);
subplot(121); imdisp(-f); title('snake potential');
subplot(122); quiver(px,py);
axis('image', 'ij', 'off');
title('traditional force');
disp(' ');
disp(' Press any key to start the deformation');
pause;
figure(1); subplot(121);
colormap(gray(64));
image(((1-f)+1)*40); axis('square', 'off');
figure, imshow(I,map); [x,y] = getpts;
colormap(gray(64));
t = 0:0.5:1;
[x,y] = snakeinterp(x,y,2,0.5);
snakedisp(x,y,'r')
pause(1);
for i=1:20,
[x,y] = snakedeform2(x,y,0.05,0,1, 2, 0.15,px,py,5);
[x,y] = snakeinterp(x,y,2,0.5);
snakedisp(x,y,'r')
title(['Deformation in progress, iter = ' num2str(i*5)])
pause(0.1);
end
disp(' ');
disp(' Press any key to display the final result');
pause;
figure(1); subplot(121);
colormap(gray(64));
image(((1-f)+1)*40); axis('square', 'off');
snakedisp(x,y,'r');
title(['Final result, iter = ' num2str(i*5)]);

 采纳的回答

Can't you just use contour() on your topographic image? You can mask out the non-crater background region if you want so that you see contours only within the craters.

3 个评论

Actually, I just need morphometry data of every crater like perimeter, major and minor axis, excentricity, and so on. The way to obtain it is to draw an active contour.
Oh, okay. So when you use activecontour() and get your binary image, then just use regionprops() to get those measurements. See my Image Segmentation Tutorial: http://www.mathworks.com/matlabcentral/fileexchange/?term=authorid%3A31862 for how to get those measurements.
See my activecontour demo, attached, if you or anyone needs a demo of that.
Great explanation. Thank you for your help.

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