protein sequence training
显示 更早的评论
hi All :)
i have protein sequences data, then i wanna to train it with neural network backpropagation, but i have a problem with data training.. because,the number of input unit and output unit are different and heterogeneus, how to equalize the number of input unit and output unit?? for example input: HKJMMLLKNJHVHVHCVGVJKLHCVGCGCH output: JMMLL
input: fdsfnhldglsfhldsfhidjgfodjgijidshfjzhnjfndjngvfngidjgxbvfgd output: idjg
there are poeple who suggest to use sliding window, but i'm so confused how to implement it
thx for ur suggestion before :)
3 个评论
Chandra Kurniawan
2012-1-15
Hi,miftahurrahma.
Are you sure you want to treat HKJMMLLKNJHVHVHCVGVJKLHCVGCGCH as input of neural network?
As we know that neural network takes numerical input.
Greg Heath
2015-10-29
What do the input and output sequences represent?
Annette K.
2024-8-16
It would be helpful to visit:MtoZ Biolabs-Mass Spectrometry Analysis Expert (mtoz-biolabs.com)
MtoZ Biolabs is an integrate contract research organization (CRO) providing advanced proteomics, metabolomics, bioinformatics, and biopharmaceutical analysis services to researchers in biochemistry, biotechnology, and biopharmaceutical fields.
采纳的回答
Greg Heath
2012-2-15
0 个投票
In general, the number of elements in the input vector, I, and the number of elements in the corresponding output vector, O, are different.
Decide what the output sequence should be given the corresponding input sequence. Then encode each so that it is a column vector of length I and O, respectively.
Finally form input and output matrices from N i/o pairs to have dimensions
[ I N ] = size(inputmatrix)
[ O N ] = size(outputmatrix)
Hope this helps.
Greg
更多回答（2 个）
lei Xiao
2015-10-29
0 个投票
It is a complex biology process and need professional technology to support you. It would be helpful to visit http://www.creative-proteomics.com/about-us.htm
类别
在 帮助中心 和 File Exchange 中查找有关 Genomics and Next Generation Sequencing 的更多信息
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!
Translated by 
