Hi Reece,
I kindly suggest you to refer to my answer on the following MATLAB answers post to understand how to simulate a model in a loop using MATLAB: https://www.mathworks.com/matlabcentral/answers/1642620-looping-and-storing-variable-to-be-used-in-simulink-model#answer_1564005?s_tid=prof_contriblnk
To store the obtained results upon simulation, you may use the "To Workspace" block in simulink and utilise the same to plot the results as per the need.
For more details on "To Workspace" block, please refer to the following MathWorks documentation: https://www.mathworks.com/help/simulink/slref/toworkspace.html
Hope this helps!