The Fourier transform is probably going to give you the mean amplitude at each frequency. If you want to find the peak-to-dip pressure pulsation at each frequency, you have to use a bandpass filter for those frequencies, then analyse the time-domain data.
There are several ways to design filters, my procedure is here: How to design a lowpass filter for ocean wave data in Matlab? Filter design is heuristic, so you will have to experiment with each filter to get the result you want.
