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Slice 3D image to obtain multiple 2D images

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prashant singh
prashant singh 2016-7-5
i have 3D images in .nii format and i want to slice them to obtain multiple 2D images Each 3D image are of size 256*256*150 and I want to obtain slices from a midpoint of z-axis like [:,:,75] to [:,:,100] interleaving 5 slices . For example [:,:,75],[:,:,80], [:,:,85]. Tricky part is i have to crop the image as well to leave the black boundary part and maintain contrast stretching of the image.

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