This cannot be done with dlmwrite()
If your integer values are small enough to fit within double then you can use
data = [A(:), B(:)] .'; %notice the transpose
fprintf(id, '%d %f\n', data);
If your integer values are small enough to fit within int64 (signed) then you can use
t1 = num2cell(A(:));
t2 = num2cell(B(:));
data = [t1, t2] .'; %notice the transpose
fprintf(id, '%d %f\n', data{:}); %expand the cell. Each argument will have its own data type so the int64 will not get truncated to double
If your integer values are uint64 (unsigned) and might not fit in int64 (signed) then proceed like above with the cells, but use %u instead of %d
