Is there any way to proof the tumor area calculation?

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I don't know whether this question suits to MathWorks or not, if it's wrong please excuse me. I'm doing brain tumor segmentation and it's area calculation.Finally with the help of Mathworks, I could able to find the area of tumor.I used this link to calculate the area of tumor.For the below Image,I got 440.7 mm2 as tumor area. (Middle lump is the tumor area in the below image)
The problem now is,I don't know whether the area calculated is correct or not,I need to show evidences to my lecturers,that this calculation is almost right.I google it, but no datasets found with the area of tumor and in hospitals also,I couldn't get these information(because,doctors way of predicting the size of tumor is different and it's confidential too). How can I do this with MATALB, or is there any other way? Please suggest me some ways.

回答(2 个)

Walter Roberson
Walter Roberson 2016-10-11
Register for https://www.smir.ch/BRATS/Start2015 to download some brain tumor datasets in which they give files that also contain the expert segmentation. With the expert segmentation of a dataset, you can create a mask, and then you can use the techniques at that link to calculate the area covered by that mask.
Then you can do something simple like nnz() [number of non-zeros] to count the pixels set in the mask. If the number does not match the other technique then you need to figure out why not, which might get into questions of how exactly to define "area" of a region. For example if a local boundary looks like
*
**
then is the area 3 (because three pixels are set)? Or is the area 1/2 (right triangle, height 1, base 1, formula is 1/2 * base * height)? Or should we count the 3 but also deduce that about half of a pixel should be considered set on the diagonal because that is "really" a straight line that happened to get pixelized?
To put the overall matter another way: you have two questions
  1. did your code find the tumor boundaries properly; and
  2. given a set of boundaries, does your code calculate the area properly
The BRATS dataset will give you images and expert boundaries, allowing you to concentrate on question #2 for the moment, namely whether you calculate area properly assuming the boundaries are proper. Which is all you asked about in your Question, verifying the area calculation.
But you could then apply your detection algorithm to some of those BRATS images and see how well it is able to do at matching the boundaries that the experts find.
Note: if you want to get energetic on proof that your area calculation works, take a picture of an object with known area, together with a known distance measure like a ruler to allow you to calculate the ratio of pixels to cm. Binarize the object part of the image, calculate the area, multiply by the square of the real-world ratio to get the area, and compare that to the known area. If you want to work with objects of irregular shape where directly measuring the area might be tricky, then cut the object out of something stiff and weigh the object and compare to the weight of a square of the material of known size.
  3 个评论
Walter Roberson
Walter Roberson 2016-10-11
Unzip the File Exchange contribution into a convenient directory that is not under the MATLAB installation directory. Use the MATLAB command pathtool to add that directory to the MATLAB path. Then use ReadData3D to read in the data

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Nhung Pham
Nhung Pham 2018-5-6
Excuse me. I'm doing a project to separate tumor from CT brain image too. I have downloaded some Dicom images on web but they are normal brain CT images, not contain tumor. How can I find tumor brain CT images with Dicom format? Please suggest me.

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