BioMap bug (bioinformatics toolbox)

2012 3 3
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Hi,
I try to construct a BioMap structure from a BAM file. I use
info = baminfo(bamFilename,'ScanDictionary',true);
bm = BioMap(bamFilename, 'SelectReference', info.ScannedDictionary{chromosomeNo});
Eventhough baminfo shows a valid reference (info.ScannedDictionary) and a number of mapped reads (info.ScannedDictionaryCount) when I create the bm object, this has no reads inside. Only 1 chromosome out of 16 gives me this problem, so I don't understand what's happening...
Any help is appreciated. Thanks!
Razvan

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Razvan
Razvan 2012-9-28

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Probably I should close this question...
The bug was fixed in release 2012b. The support team sent me a dll file which fixes the bug in versions <= 2012a. If anyone has the same problem, I can send you the fixed dll, if you request it.

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