Info

此问题已关闭。 请重新打开它进行编辑或回答。

Calling bowtie2 from matlab

1 次查看（过去 30 天）
Guy Nir
Guy Nir 2017-9-15
关闭： MATLAB Answer Bot 2021-8-20
I am trying to run bowtie2 from matlab: [a,b]=unix('bowtie2 -h') the output is: a =127 b='bin/bash not such command' so I copied all the executables to usr/bin and then it gave me: a = 127 b = 'env: perl: No such file or directory'
And in my startup.m I have: setenv('PATH','usr/bin:/usr/local/bin'); Where bowtie2 is defined, and when I type the same bowtie2 command from terminal it works. It used to work in matlab too, in an earlier version, but now i am using 2017a, and it's not working anymore. I would love to get some answers. Thank you

请先登录，再回答此问题。

回答（1 个）

Ramnarayan Krishnamurthy
Can you try running bowtie2 from matlab using the 'system' command. That is,
[a,b] = system('bowtie2 -h')
Also, there is a possibility that the startup.m is being shadowed. Try running to check if there are multiple startup files:
which -all startup
  1 个评论
Guy Nir
Guy Nir 2017-9-21
Hi Ramnarayan,
Apparently I somehow deleted a backslash from my startup.m, and thus, didn't have PATH well-defined. It works well now!
Thanks, Guy

标签

产品

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by