I discovered the Simulink.BlockDiagram.getChecksum function, and was able to get 3 different checksums from it: the main check, the content and then the interface. However, none of these match the checksum I get from a System Design Description report or the Code Inspector.
Still not sure how I can generate a checksum in the same format as the 2 reports I mentioned. Would be nice to be able to see if reports match the model that is in the workspace.