Plot u vs. t with PDEPE. "Index exceeds matrix dimensions."
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Hello,
I can't seem to figure out how to plot u (concentration) vs. t (time) at a specific x (distance).
function simple_time_dependent_pdepe
clear all; close all; clc;
%
D_ij = 1*10^-6; %Diffusion coefficient D (3.0*10^-7 cm^2/s -> 30 um^2/s)
L0 = 1; %c0 [nM]
x_f =0.02; %Length of domain [um]
maxt = 10; %Max simulation time [s]
%
m = 0; %Parameter corresponding to the symmetry of the problem
x = linspace(0,x_f,100); %xmesh
t = linspace(0,maxt,100); %tspan
%
sol = pdepe(m,@DiffusionPDEfun,@DiffusionICfun,@DiffusionBCfun,x,t,[]);
u = sol;
%
% Plotting
plot(t,sol(:,500),'LineWidth',2)
function [c,f,s] = DiffusionPDEfun(x,t,u,dudx)
D = D_ij;
%
%Rate constants
k_1 = 0.25;
R_L = -k_1.*u;
%
% PDE
c = 1;
f = D_ij.*dudx;
s = R_L;
end
%
function u0 = DiffusionICfun(x)
u0 = 0;
end
%
function [pl,ql,pr,qr] = DiffusionBCfun(xl,ul,xr,ur,t)
c0 = L0;
pl = ul-c0;
ql = 0;
pr = 0;
qr = 1;
end
end
I tried using
plot(t,sol(:,500),'LineWidth',2)
However, I get the error "Index exceeds matrix dimensions."
Am I missing something?
7 个评论
Torsten
2018-8-16
plot (t,sol(:,100,1))
plots the solution over time at x(100), e.g.
Does that help ?
Best wishes
Torsten.
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