Alignment(3,:) in seqinsertgaps
显示 更早的评论
Hi guys. There's someone able to explain me why in seqinsertgaps for the alignment (al) I have to choose the first and the third line?i.e al(1,:)
al(3,:) What should be the general criterion? Thanks a lot
采纳的回答
Tim DeFreitas
2018-11-30
The alignment returned by nwalign is a 3xN character array showing the optimal alignment between the two input protein sequences. The first row is the first input sequence, the middle row shows alignment information, and the last shows the second sequence:
>> al(:,1:10)
ans =
3×10 char array
'QKQEIKMNPN'
' ||||'
'------MNPN'
We then use seqinsertgaps to get the original nucleotide sequence, but with the gap information returned by the alignment, so the inputs are the first and third rows of the alignment character vector.
1 个评论
madhan ravi
2018-12-4
Great!
更多回答（0 个）
类别
在 帮助中心 和 File Exchange 中查找有关 Genomics and Next Generation Sequencing 的更多信息
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!
Translated by 
