how to incorpolate various variables in simbiology model

Question

Kazutaka Sekiguchi 2020-4-19

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https://ww2.mathworks.cn/matlabcentral/answers/519088-how-to-incorpolate-various-variables-in-simbiology-model

编辑： Fulden Buyukozturk 2020-4-22

采纳的回答： Fulden Buyukozturk

hi, i'm creating the PBPK model which consists of 10 tissues with simbiology GUI

now, i would like to feed drug distribution parameter for each tissues in short time.

my understanding is that such variables should be incorpolated manually one by one as long as using simbiology GUI

is there any way to feed various parameters into simbiology model?

I think that it's the most ideal to export simbiology model to MATLAB code and implement some syntax to feed such variables

Thanks!

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Kazutaka Sekiguchi 2020-4-21

thank you so much and sorry for late reply

i understand how to export simbiology model to matlab code and feed parameters! I'll try that

Fulden Buyukozturk 2020-4-22

Glad to hear. I'll put the "comment" above to the "answer field" below.

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Answer 1

Fulden Buyukozturk 2020-4-22

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https://ww2.mathworks.cn/matlabcentral/answers/519088-how-to-incorpolate-various-variables-in-simbiology-model#answer_427584

编辑：Fulden Buyukozturk 2020-4-22

Hi Kazutaka,

You can export SimBiology model from GUI to MATLAB workspace and then use a script to add parameters. If you keep the GUI and the project file open, the changes you make through command-line will be reflected in the project in GUI as well.

To export, chose export model to workspace:

For documentation on how to add parameters and programmatic model building in general, please see:

https://www.mathworks.com/help/simbio/ref/addparameter.html

https://www.mathworks.com/help/simbio/gs/-model-a-gene-regulation-pathway.html

Additionally, if you have multiple parameter values, let's say for different species (human, mouse, etc.), you can store those in model Variants and apply to the model during simulation:

https://www.mathworks.com/help/simbio/ug/variant-object.html

Let me know if this helps.

Fuldend