Error when using getgeodata

2 次查看（过去 30 天）
Vitaly Kheyfets
Vitaly Kheyfets 2020-5-29
评论： Vitaly Kheyfets 2020-5-29
Hello,
When I try this example to import GEO series data, I get an error that Matlab is "Unable to find data for the specified GEO Accession Number."
https://www.mathworks.com/help/bioinfo/examples/working-with-geo-series-data.html
When I try with the dataset I am hoping to download, I get the exact same error.
However, when I try: geoStruct = getgeodata('GSM1768') .... this seems to work.
Is the issue with GSE series?
Thank You,
Vitaly
  1 个评论
Tim DeFreitas
Tim DeFreitas 2020-5-29
Can you share the exact command that you are running that is giving you the erorr? I am able to retrieve the GSE data in the example:
>> gseData = getgeodata('GSE5847', 'ToFile', 'GSE5847.txt')
gseData =
struct with fields:
Header: [1×1 struct]
Data: [22283×95 bioma.data.DataMatrix]

请先登录，再进行评论。

请先登录，再回答此问题。

回答（1 个）

Vitaly Kheyfets
Vitaly Kheyfets 2020-5-29
Hi Tim,
That's strange. This is what I'm getting:
Thanks,
Vitaly
>> gseData = getgeodata('GSE5847', 'ToFile', 'GSE5847.txt')
Error using getgeodata (line 156)
Unable to find data for the specified GEO Accession Number. Recently
submitted data sets might not be available for immediate download.
  2 个评论
Tim DeFreitas
Tim DeFreitas 2020-5-29
What version of Matlab are you using? If you have an older version, you are likely running into this: https://www.mathworks.com/support/bugreports/2175385
Vitaly Kheyfets
Vitaly Kheyfets 2020-5-29
Yup, I'm using 2018b. Thanks!!!
Vitaly

请先登录，再进行评论。

类别

在 Help Center 和 File Exchange 中查找有关 Weather and Atmospheric Science 的更多信息

标签

产品


版本

R2018b

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by