Handwritten code Development vs. Model-based design

Greetings,
I am kind of new to matlab and I am learning MBD using SIMULINK.. I went over the benefits of MBD and how it makes everything easier, still I would like to understand its limits and when do we prefer handwritten code over it ( some real-life examples that embody choosing Handwritten code over MBD would be very appreciated too).
Thanks in advance!

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