How to export imaris image to MATLAB?

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CHUFAN XIAO
CHUFAN XIAO 2020-6-23
评论： Shubham 2023-3-7
I'm trying to export 3D images from imaris to MATLAB，and get the matrix in MATLAB. Do the plug in imaris can help? Or can I just read .ims format in MATLAB? Hoping to get answers soon. Thanks!

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回答（1 个）

Aditya Verma
Aditya Verma 2020-6-24
Hi!
While MATLAB doesn't support imaris file format out of the box (which can be check from here), you can use the implementation provided in the File Exchange by Peter Beemiller: https://www.mathworks.com/matlabcentral/fileexchange/56534-peterbeemiller-imarisreader.
The instructions to use it are specified in the github repository: https://github.com/PeterBeemiller/ImarisReader
Thanks
  2 个评论
CHUFAN XIAO
CHUFAN XIAO 2020-6-26
Thanks for your help! I've tried but there's running some bugs like
Error using hdf5lib2
The HDF5 library encountered an error and produced the following stack trace information:
H5Gclose not a group
warning H5G.close (line 16)
H5ML.hdf5lib2('H5Gclose', id);
warning SurpassObjectReader/delete (line 117)
H5G.close(obj.GIDS8)
warning SpotsReader (line 16)
function obj = SpotsReader(GID)
warning ImarisReader (line 137)
cSpots = SpotsReader(cGID);
I don't know how to do with it. And "hdf5lib2" cannot find files, so is it the problem of hdf5?
Shubham
Shubham 2023-3-7
@CHUFAN XIAO Did you solve it? I am also getting the same error.

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