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MEX Creation of a Function with Input Parameters

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I am trying to generate a MEX file of a function that has input parameters (like 'function [] = run(inputfile)', but emlmex gives me a an error about preconditions. I have several functions that are calling each other and passing information between them, and I want to make MEX files of all of them in an effort to speed up processing.
Any ideas how I get around this "precondition" problem?
Thanks.
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Paul Huter
Paul Huter 2013-3-25
I see that I can use '-eg' when calling emlmex, but that seems to require me to specify exactly what I am loading, but in instances where I am trying to load a matrix or vector of unknown size, this does not work.

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