How can I reduce my code ? It suddenly become so so slow

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I have a big code, and the tic-toc timing of this part is so big. few days ago my code was work fast. I tried a lot if solutions such as:
  • Pre-allocate variables.
  • Unistall and re-install Matlab.
But with any positive solutions, I can't use parallel because there are a relation between loops. I want my code that become fast as old-days.
The tic toc timing is between 6 seconds and 4 seconds. ( is not take a constant value).
function [Res]=...
ArAddSolutions(Ne, Ar,So,ArMaxSize, Tr,ObF,Constraints,MA,lb,ub)
global ObjOne;
global ObjTwo;
global ObjThree;
NewP=[];
if( size (So,1)>=1 )
% Remove Redudndance In soulution
i=1;
while( i<=size(So,1)-1)
j= i+1;
while( j<=size(So,1))
if(So(i,:)==So(j,:))
So(j,:)=[];
else
j= j+1;
end
end
i=i+1;
end
for i=1: size(So,1)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Accept Conditions or nop
Flag4ub=So(i,:)>ub;
Flag4lb=So(i,:)<lb;
Respectb=true;
In =1;
while( ( In<= size(Flag4ub,2) )&& (Respectb) )
if( ( sum(Flag4ub)>0) || (sum (Flag4lb)>0) )
Respectb=false;
end
In =1+In;
end
if( Constraints(So(i,:),Tr) && (Respectb) )
%%%%%%%%%%%%%%%%%%%%%%%%% new soulution exist or In Ar nooooop ;)
ExistInAr=false;
ii=1;
while( ( ii<=size(Ar,1)) && (ExistInAr==false))
if(So(i,:)==Ar(ii,:))
ExistInAr=true;
else
ii= ii+1;
end
end
if(~ExistInAr)
% Non Dominated or nop
NonDominated=true;
DomineListe=[];
Obj1 = ObF(Ne,So(i,:),Tr,ObjOne,MA);
Obj2 = ObF(Ne,So(i,:),Tr,ObjTwo,MA);
Obj3 = ObF(Ne,So(i,:),Tr,ObjThree,MA);
j=1;
while ( (j <= size(Ar,1)) && (NonDominated) )
ArObj1 = ObF(Ne,Ar(j,:),Tr,ObjOne,MA);
ArObj2 = ObF(Ne,Ar(j,:),Tr,ObjTwo,MA);
ArObj3 = ObF(Ne,Ar(j,:),Tr,ObjThree,MA);
if ( (Obj1>ArObj1 ) && (Obj2>ArObj2) && (Obj3>ArObj3 ))
NonDominated=false;
%NewP=[NewP; ArObj1,ArObj2,ArObj3];
else
if ( (Obj1<ArObj1 ) && (Obj2<ArObj2) && (Obj3<ArObj3 ))
DomineListe=[DomineListe,j];
end
end
j=j+1;
end
% Add soulition in Ar
if(NonDominated)
% Remove from Ar If dominate
forj=1:size(DomineListe,1)
Ar( DomineListe(j) ,:)=[];
end
while (size(Ar,1)>=ArMaxSize )
[Ar,ArScore]=...
CrowdingDistanceAlgorithm(Ne, Ar,Tr,ObF,MA);
Ar(size(Ar,1),:)=[];
end
Ar=[Ar; So(i,:)];
end
end
end
end
end
Res=Ar;
end

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