How to segment lung from 2D images

Question

AUWAL ABUBAKAR 2021-2-20

0
链接

此问题的直接链接

https://ww2.mathworks.cn/matlabcentral/answers/751089-how-to-segment-lung-from-2d-images

回答： Keerthana Chiruvolu 2021-2-23

Good day,

I have multiple 2D images from which I would like to segment the lung field from each. I successfully developed a code to do that, but it does not work for all the images as the contrast slightly vary from one image to the other (Image1 and 2 attached). I try using ‘imhistmatch’ to match the contrast between the images but without success. Please see my code below and the results obtained in fig.1. Could someone please help me modify the code to suit this purpose or suggest a better method to achieve this?

clear;clc;close all
% Ia=imread('image1.jpg');
load image1
         II = adapthisteq(Ia,'clipLimit',0.02,'Distribution','rayleigh');  
          subplot(2,4,2);imshow(II);title('Adjusted contrast')
        II(II>35000)=0;     
        II = bwareaopen(II,50); %remove connected components
        mask = bwareafilt(II, 2); %There are small noise blobs.  Extract the two largest objects.
        z=ImageAnalyst(mask,-1); %Extract the 2nd largest objects.
        subplot(2,4,1);imshow(Ia);title('Original image1')
        subplot(2,4,3);imshow(z);title('segmented lung')
         subplot(2,4,4);imshowpair(z,Ia);title('Image1/lung pair')
%%        
% image2     
% Ib=imread('image2.jpg');
load image2
I=imhistmatch(Ib, Ia);% adjust the histogram of 2D image to macth histogram of image1 image
I = adapthisteq(Ib,'clipLimit',0.02,'Distribution','rayleigh'); 
        subplot(2,4,6);imshow(I);title('Adjusted contrast')
        I(I>35000)=0;     
        I = bwareaopen(I,50); %remove connected components
        mask = bwareafilt(I, 2); %There are small noise blobs.  Extract the two largest objects.
        z=ImageAnalyst(mask,-1); %Extract the 2nd largest objects ising ImageAnalyst funtion
        subplot(2,4,5);imshow(Ib);title('Original image2')
        subplot(2,4,7);imshow(z);title('segmented lung')
         subplot(2,4,8);imshowpair(z,Ib);title('Image2/lung pair')

3 个评论
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KALYAN ACHARJYA 2021-2-20

More @AUWAL ABUBAKAR Are the images properly attached?

AUWAL ABUBAKAR 2021-2-20

Thanks for your response @KALYAN ACHARJYA and @darova. There was an error attaching the images. I have attached the variables now. Thanks

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Answer 1

Keerthana Chiruvolu 2021-2-23

0
链接

此回答的直接链接

https://ww2.mathworks.cn/matlabcentral/answers/751089-how-to-segment-lung-from-2d-images#answer_630919

Hi,

Use the Image Segmenter App to segment the lungs from the images and generate binary mask easily. You can import the original image and export the mask directly to MATLAB Workspace.